PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.050000.1 | ||||||||
Common Name | Csa_7G429520, LOC101221600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 327aa MW: 36157 Da PI: 5.5855 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 166 | 220 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Cucsa.050000.1 166 RKKLRLSKEQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 220 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.9 | 4.3e-41 | 166 | 256 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Cucsa.050000.1 166 RKKLRLSKEQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 256 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 148 | 220 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.38E-18 | 159 | 223 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 162 | 222 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 164 | 226 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.46E-16 | 166 | 223 | No hit | No description |
Pfam | PF00046 | 9.9E-16 | 166 | 220 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 197 | 220 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.5E-11 | 222 | 256 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.0E-24 | 222 | 265 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MELGLSLGDA PKPFRFVEKQ SQVPSPQRRL SRKDLGFCVD LSIGRSVAGD KEDDEDKPNQ 60 GEDESDGNED PPTQLDLLPH NPVPRNLTNP YQGFPWPSSE NDEGEDRTAS PNSAASSFQM 120 EFGLYGSGGN ISSRRDQMEN GVMNEVGESE RASSRASDED ENGCTRKKLR LSKEQSAFLE 180 ESFKEHNTLN PKQKQALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE 240 ENRRLQKELQ ELRALKTTNS LYMQLPATTL TMCPSCERVT SSSAASTVAA TEGVTKRSGL 300 AIGGGRPGSS SFPFSAKTQS HQSTAS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 170 | TRKKLRL |
2 | 214 | 222 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681804 | 1e-172 | LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060. | |||
GenBank | LN713255 | 1e-172 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004135907.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 7e-92 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A0A0KBJ3 | 0.0 | A0A0A0KBJ3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004135907.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-85 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.050000.1 |
Entrez Gene | 101221600 |
Publications ? help Back to Top | |||
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