PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.049620.1

Common Name

Csa_3G212490

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 415aa MW: 46369.7 Da PI: 7.3972

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.049620.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2.1e-30	176	235	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Cucsa.049620.1 176 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 235 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.5E-33	161	237	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-28	169	237	IPR003657	WRKY domain
PROSITE profile	PS50811	29.161	171	237	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	176	236	IPR003657	WRKY domain
Pfam	PF03106	3.0E-27	177	235	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEMDRIKEEN KALRKAVEQT MKDYYDLEMK IGFFQQNNNL NNKLECDHNF LSFHGNENKR 60 HEELTKHDLE LGEMAKKKRR VGSASKEDEM RESELGLSLG LHTKNSNDDL EQEDNDRELL 120 IEEERREIKN KENSIIMSNF NSIQNKPQRP ELQAMAPPQN RKARVSVRAR CESATMNDGC 180 QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED MSILITTYEG THNHPLPVGA 240 TAMASTASAA SASFMLLDSS NTNNTNLSNS LHLNPNILNS SSPSFLQTQN PTNHLFTPLF 300 PTSSTSHFPH SFYHSNFQPN HLVGPLDRRT WKPTDDNKPP PFTPDAVSAI ASDPKFRVAV 360 AAAISSLINK ENEHMTTSMT GETVTDGKGG GGSDSDSGNK KWVVESLSSK SNGN*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEMDRIKEEN KALRKAVEQT MKDYYDLEMK IGFFQQNNNL NNKLECDHNF LSFHGNENKR  60
HEELTKHDLE LGEMAKKKRR VGSASKEDEM RESELGLSLG LHTKNSNDDL EQEDNDRELL  120
IEEERREIKN KENSIIMSNF NSIQNKPQRP ELQAMAPPQN RKARVSVRAR CESATMNDGC  180
QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED MSILITTYEG THNHPLPVGA  240
TAMASTASAA SASFMLLDSS NTNNTNLSNS LHLNPNILNS SSPSFLQTQN PTNHLFTPLF  300
PTSSTSHFPH SFYHSNFQPN HLVGPLDRRT WKPTDDNKPP PFTPDAVSAI ASDPKFRVAV  360
AAAISSLINK ENEHMTTSMT GETVTDGKGG GGSDSDSGNK KWVVESLSSK SNGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-22	163	239	1	76	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	79	KKKRR
2	75	80	KKKRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984019	0.0	GU984019.1 Cucumis sativus WRKY protein (WRKY19) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650228.1	0.0	PREDICTED: uncharacterized protein LOC101215114 isoform X1
TrEMBL	A0A0A0LC02	0.0	A0A0A0LC02_CUCSA; Uncharacterized protein
STRING	XP_004140688.1	0.0	(Cucumis sativus)
STRING	XP_004160457.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9320	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	3e-64	WRKY DNA-binding protein 9

Link Out ? help Back to Top
Phytozome	Cucsa.049620.1
Entrez Gene	101215114

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Ling J, et al. Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics, 2011. 12: p. 471 [PMID:21955985] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]