PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.048930.3 | ||||||||
Common Name | Csa_6G538640, LOC101221972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | FAR1 | ||||||||
Protein Properties | Length: 710aa MW: 82660.9 Da PI: 6.7169 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.4 | 1.9e-26 | 28 | 114 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YAk++GF ++k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+v++++++HnH+l p Cucsa.048930.3 28 SFYRDYAKSMGFGTSKLSSRRSRASKEFIDAKFSCMRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKHNGKWYVYSFVKDHNHDLLP 114 5****************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-24 | 28 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-24 | 227 | 320 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.608 | 507 | 543 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.4E-8 | 515 | 541 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.6E-7 | 518 | 545 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MNSNSIIPNS FLEPCLGMEF DSHEHAYSFY RDYAKSMGFG TSKLSSRRSR ASKEFIDAKF 60 SCMRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKHNGKWY VYSFVKDHNH DLLPSQVHLF 120 RSHRNIDPLK NDVKIRKRKN SAAISKLFSA YQNVDCLENF VRNQHDKGRT LALESGDAHI 180 LLELFMHMQQ ENPKFFYAVD MNEEHQLRNV FWVDGKGMED YAHFGDVVSF DTTYFTNKYK 240 LPLVLFIGVN HHIQHTLLGC ALIADDTLYT YLWLMQTWYI AMGERSPKVI LTDQNTSMKA 300 VIEAVLPGTR HYFSLWYILE KIPKELEFLS MWHENFMEKF KKCVFKSWTK EEFEKRWQKL 360 LDKFNLREVE WMQHLYDDRA YWVPAFAEDV SFAGLCTSSR MESLNSSFDK YVQIETSLKE 420 FIDRYRDILE ERYEEEAKAN FDAWHETPEL KSPSPFEKQM SLVYTYEIFK KFQMEVLGAA 480 ACHLKKETED ETIATYNVKD FEDGQNYVVE CSHSNSDIYC SCRSFEYKGF LCRHAIIVLQ 540 MSGVFSIPSK YILQRWTNTA MSRNPINEKL DEVQYKVRRF NDLCRRAIIL GEEGSLSQES 600 YDIALSAINE ALKQCATVSR SSSAETDVRS DTSTMLVFGS SNEPEVNESN KNGKVSQPFA 660 TNAGSRDDFN QMELSDMRPI QLSGISPTQL HNMMQMQMLM LMLMQQLNS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134520.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A0A0KIK5 | 0.0 | A0A0A0KIK5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170703.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.048930.3 |
Entrez Gene | 101221972 |
Publications ? help Back to Top | |||
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