PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.048930.2

Common Name

Csa_6G538640, LOC101221972

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 742aa MW: 86076.7 Da PI: 6.6461

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.048930.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.3	2e-26	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YAk++GF ++k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+v++++++HnH+l p Cucsa.048930.2 28 SFYRDYAKSMGFGTSKLSSRRSRASKEFIDAKFSCMRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKHNGKWYVYSFVKDHNHDLLP 114 5**************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-24	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-24	227	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.608	507	543	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-8	515	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-7	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MNSNSIIPNS FLEPCLGMEF DSHEHAYSFY RDYAKSMGFG TSKLSSRRSR ASKEFIDAKF 60 SCMRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKHNGKWY VYSFVKDHNH DLLPSQVHLF 120 RSHRNIDPLK NDVKIRKRKN SAAISKLFSA YQNVDCLENF VRNQHDKGRT LALESGDAHI 180 LLELFMHMQQ ENPKFFYAVD MNEEHQLRNV FWVDGKGMED YAHFGDVVSF DTTYFTNKYK 240 LPLVLFIGVN HHIQHTLLGC ALIADDTLYT YLWLMQTWYI AMGERSPKVI LTDQNTSMKA 300 VIEAVLPGTR HYFSLWYILE KIPKELEFLS MWHENFMEKF KKCVFKSWTK EEFEKRWQKL 360 LDKFNLREVE WMQHLYDDRA YWVPAFAEDV SFAGLCTSSR MESLNSSFDK YVQIETSLKE 420 FIDRYRDILE ERYEEEAKAN FDAWHETPEL KSPSPFEKQM SLVYTYEIFK KFQMEVLGAA 480 ACHLKKETED ETIATYNVKD FEDGQNYVVE CSHSNSDIYC SCRSFEYKGF LCRHAIIVLQ 540 MSGVFSIPSK YILQRWTNTA MSRNPINEKL DEVQYKVRRF NDLCRRAIIL GEEGSLSQES 600 YDIALSAINE ALKQCATVSR SSSAETDVRS DTSTMLVFGI EDNQCNNNNL AVDNAPDLKV 660 INAKKIPNLA GSSNEPEVNE SNKNGKVSQP FATNAGSRDD FNQMELSDMR PIQLSGISPT 720 QLHNMMQMQM LMLMLMQQLN S*

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MNSNSIIPNS FLEPCLGMEF DSHEHAYSFY RDYAKSMGFG TSKLSSRRSR ASKEFIDAKF  60
SCMRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKHNGKWY VYSFVKDHNH DLLPSQVHLF  120
RSHRNIDPLK NDVKIRKRKN SAAISKLFSA YQNVDCLENF VRNQHDKGRT LALESGDAHI  180
LLELFMHMQQ ENPKFFYAVD MNEEHQLRNV FWVDGKGMED YAHFGDVVSF DTTYFTNKYK  240
LPLVLFIGVN HHIQHTLLGC ALIADDTLYT YLWLMQTWYI AMGERSPKVI LTDQNTSMKA  300
VIEAVLPGTR HYFSLWYILE KIPKELEFLS MWHENFMEKF KKCVFKSWTK EEFEKRWQKL  360
LDKFNLREVE WMQHLYDDRA YWVPAFAEDV SFAGLCTSSR MESLNSSFDK YVQIETSLKE  420
FIDRYRDILE ERYEEEAKAN FDAWHETPEL KSPSPFEKQM SLVYTYEIFK KFQMEVLGAA  480
ACHLKKETED ETIATYNVKD FEDGQNYVVE CSHSNSDIYC SCRSFEYKGF LCRHAIIVLQ  540
MSGVFSIPSK YILQRWTNTA MSRNPINEKL DEVQYKVRRF NDLCRRAIIL GEEGSLSQES  600
YDIALSAINE ALKQCATVSR SSSAETDVRS DTSTMLVFGI EDNQCNNNNL AVDNAPDLKV  660
INAKKIPNLA GSSNEPEVNE SNKNGKVSQP FATNAGSRDD FNQMELSDMR PIQLSGISPT  720
QLHNMMQMQM LMLMLMQQLN S*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134520.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A0A0KIK5	0.0	A0A0A0KIK5_CUCSA; Uncharacterized protein
STRING	XP_004170703.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Cucsa.048930.2
Entrez Gene	101221972

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]