PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.048220.1 | ||||||||
Common Name | Csa_6G525430, LOC101210154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 848aa MW: 92712.7 Da PI: 6.059 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Cucsa.048220.1 18 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP | |||||||
2 | START | 164.2 | 9.4e-52 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +l vi +g g+++l+ Cucsa.048220.1 167 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWYRDCRCLNVLSVIPTGngGTIELI 260 6899******************************************************.8999999999************************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l++ Rdf++ Ry+ +l++g++v++++S++s + p s +vRae+lpSg+li+ +++g+s +++v+h+dl+ ++++++lr+l+ Cucsa.048220.1 261 YMQTYAPTTLAAaRDFWTMRYTTSLEDGSLVVCERSLSSSSGGPAgppPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLY 355 ***************************************999888877899******************************************** PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+ + ++k++ a+l++ + Cucsa.048220.1 356 ESSKILAQKITIAALRHIR 374 **************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.71 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.0E-16 | 15 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-16 | 18 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-16 | 18 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.14E-16 | 18 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.81E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 23.648 | 157 | 385 | IPR002913 | START domain |
CDD | cd08875 | 2.05E-68 | 161 | 377 | No hit | No description |
SMART | SM00234 | 1.5E-46 | 166 | 376 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.9E-21 | 166 | 352 | IPR023393 | START-like domain |
Pfam | PF01852 | 4.3E-49 | 167 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.48E-36 | 167 | 378 | No hit | No description |
Pfam | PF08670 | 2.9E-50 | 702 | 846 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence Send to blast |
MALVIHKDTS NKQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKES SRLQSVNRKL SAMNKLLMEE NDRLQKQVSH LVYENGFMRQ 120 QLHSASGTTT DNSCESVVMS GQPQQQQNPN PQHPNRDVNN PAGLLAVAEE TLAEFLSKAT 180 GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRLSWYRDC 240 RCLNVLSVIP TGNGGTIELI YMQTYAPTTL AAARDFWTMR YTTSLEDGSL VVCERSLSSS 300 SGGPAGPPPS TFVRAEMLPS GYLIRACEGG GSIIHIVDHI DLDVWSVPEV LRPLYESSKI 360 LAQKITIAAL RHIRQIAQET NGEIQCTGGR QPAVLRTFSQ KLCRGFNDAV NGFADDGWSP 420 MGSDGVEDVT ILINTSANKF SGSQYNTSLY PSFGGGVMCA KASMLLQNVP PALLVRFLRE 480 HRSEWADYGV DAYSAASLKA SPYAVPCARP GGFPSSQVIL PLATTVEHEE FLEVVRLEGL 540 AFSPEDVALA GRDMYLLQLC SGVDENAVGA CAQLVFAPID ESFADDAPLL PSGFRVIPLD 600 PKTDEPTAAR TLDLASTLEV GANAARSAGE TDLSNYNLRS VLTIAFQFTF ENHLQENVAA 660 MARQYVRSVV GSVQRVAMAI SPSRLSSNMG LKPLPGSPEA LTLARWICRS YRVHVGAELL 720 QADSQSGDAM LKQLWHHSDA IMCCSVKTNA SAVFTFANQA GLDMLETTLV GLQDIMLDKI 780 LDEAGRKILC SEFPKIMQQG FANLPSGICV SSMGRPISYE QAVAWKVLND DDSNHCLAFM 840 FINWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00170 | DAP | Transfer from AT1G30490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658319.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | O04292 | 0.0 | ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9 | ||||
TrEMBL | A0A0A0KM58 | 0.0 | A0A0A0KM58_CUCSA; Uncharacterized protein | ||||
STRING | XP_008439554.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.048220.1 |
Entrez Gene | 101210154 |