PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.047860.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 454aa MW: 49155.2 Da PI: 9.2429 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.1 | 9.3e-36 | 86 | 235 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...eae 76 g+kdrhsk+ T++g+RdRRvRls+ +a++f+dLqd+LGf ++sk++eWL+++a aikel+++ + + Cucsa.047860.2 86 SGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIKAAADAIKELPSLnasfpetpkqlsgekisV------TdrpGPL 174 689*************************************************************665554443333222210......1222222 PP TCP 77 sssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 +s++++ +s+ + + +++a+s++s++s+ s l+l++ r kar+ra+er ++++ +++ Cucsa.047860.2 175 DSVEQK-HSQLHVSLSKSACSSNSETSKGSGLSLSRsevrVNRLKARERAKERAQKEKEKEQ 235 222222.2333355555567777777777777777753335669999999996655554443 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-40 | 87 | 233 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.662 | 88 | 146 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.617 | 213 | 231 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 454 aa Download sequence Send to blast |
MEVVDNIQEQ PRKFPRLANG RSSDSNEIGL KGVENIHTGD EKDKESKRDG GITAGVGGGG 60 LGGADDETNR LRGWHHSRII RVSRASGGKD RHSKVWTSKG LRDRRVRLSV ATAIQFYDLQ 120 DRLGFEQPSK AVEWLIKAAA DAIKELPSLN ASFPETPKQL SGEKISVTDR PGPLDSVEQK 180 HSQLHVSLSK SACSSNSETS KGSGLSLSRS EVRVNRLKAR ERAKERAQKE KEKEQDSSRI 240 TDHNLSSMTR NSSFTELLAG GAASVSAHRD AGVAAERQWQ SSTVAMDYFS SGILEPSTSR 300 THHSSGFSDQ MNLGTSLPQT MSSTPLFSSV STGDSNAEQL HQFSFVHDGN IVPVATTQPG 360 GGNDYSLNFT ISSNLPGYYR GTLQSNSSLL PHLQRFSPVD GSNLPFLFGA ATSAAPQLEN 420 HNHYQFSPAF DGRLQLCYGG GNRQSEQKGK GKD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-22 | 93 | 147 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-22 | 93 | 147 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134620.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
TrEMBL | A0A1S3AZT2 | 0.0 | A0A1S3AZT2_CUCME; transcription factor TCP2-like | ||||
STRING | XP_004134620.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-71 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.047860.2 |