PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.047280.2
Common NameCUM1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27381 Da    PI: 9.99
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.047280.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.5e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Cucsa.047280.2 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box113.91.6e-37931894100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+++ +qqe+akL+ +i nLq+++R++lGe+L+sL+ k+L+ Le++Lek++++iRskKnell+++ie+++k+e +l+++n++Lr+k+
  Cucsa.047280.2  93 SNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLTAKDLKGLETKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQMLRAKI 187
                     3444499***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  Cucsa.047280.2 188 AE 189
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1321777IPR002100Transcription factor, MADS-box
CDDcd002657.06E-461894No hitNo description
SuperFamilySSF554551.31E-331892IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-331939IPR002100Transcription factor, MADS-box
PfamPF003198.6E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-335475IPR002100Transcription factor, MADS-box
PfamPF014864.9E-28100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.98103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFQNQEEKMS DSPQRKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVKA TIDRYKKASS DSSNTGSTSE ANTQFYQQEA AKLRVQIGNL  120
QNSNRNMLGE SLSSLTAKDL KGLETKLEKG ISRIRSKKNE LLFAEIEYMR KREIDLHNNN  180
QMLRAKIAES ERNVNMMGGE FELMQSHPYD PRDFFQVNGL QHNHQYPRQD NMALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-211789173Myocyte-specific enhancer factor 2B
1tqe_Q2e-211789173Myocyte-specific enhancer factor 2B
1tqe_R2e-211789173Myocyte-specific enhancer factor 2B
1tqe_S2e-211789173Myocyte-specific enhancer factor 2B
6c9l_A2e-211789173Myocyte-specific enhancer factor 2B
6c9l_B2e-211789173Myocyte-specific enhancer factor 2B
6c9l_C2e-211789173Myocyte-specific enhancer factor 2B
6c9l_D2e-211789173Myocyte-specific enhancer factor 2B
6c9l_E2e-211789173Myocyte-specific enhancer factor 2B
6c9l_F2e-211789173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0223790.0AF022379.1 Cucumis sativus agamous-like putative transcription factor (CAG3) mRNA, complete cds.
GenBankAF0354380.0AF035438.1 Cucumis sativus MADS box protein CUM1 (CUM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292633.11e-177floral homeotic protein AGAMOUS
RefseqXP_011658265.11e-176PREDICTED: floral homeotic protein AGAMOUS isoform X1
SwissprotQ435851e-127AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLO649581e-175O64958_CUCSA; CUM1
TrEMBLQ9SBK11e-175Q9SBK1_CUCSA; Agamous-like putative transcription factor
STRINGXP_008439700.11e-175(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]
  2. Kater MM, et al.
    Multiple AGAMOUS homologs from cucumber and petunia differ in their ability to induce reproductive organ fate.
    Plant Cell, 1998. 10(2): p. 171-82
    [PMID:9490741]
  3. Perl-Treves R,Kahana A,Rosenman N,Xiang Y,Silberstein L
    Expression of multiple AGAMOUS-like genes in male and female flowers of cucumber (Cucumis sativus L.).
    Plant Cell Physiol., 1998. 39(7): p. 701-10
    [PMID:9729894]