PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.046640.3 | ||||||||
Common Name | Csa_6G518270, LOC101218828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WOX | ||||||||
Protein Properties | Length: 351aa MW: 38127.5 Da PI: 8.165 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.7e-18 | 60 | 120 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Cucsa.046640.3 60 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKN 120 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 111.9 | 3.3e-36 | 59 | 121 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k Cucsa.046640.3 59 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKNK 121 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-12 | 56 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.576 | 56 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.2E-9 | 58 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-7 | 59 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.07E-8 | 59 | 121 | No hit | No description |
Pfam | PF00046 | 1.9E-15 | 60 | 119 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNSH HQWQHDINTT SLSSSTPTSC LRSAPYTTVG GCEERSPEPK 60 PRWNPKPEQI RILEAIFNSG MVNPPRDEIR KIRAQLQEYG QVGDANVFYW FQNRKSRSKN 120 KLRHIQNSKS NHNSQTTTTT SITASAAATT ATCSSSSSSD KSSPKKPPTK TLTSNNSVTQ 180 NYLHQPTNEI LPDPFFFPVS STQTGSGGGS CNLSQGFCFS ELCSVVQPVA EHGVGPCTSL 240 LLSEIMSPTE ALKKDLDQDK INMSTISTPL TTLPSPTNTI PQGVGEVCGV GKSTVFINGV 300 GFEVSSGPFN VREAFGDEAV LIHSNGQPVL TNDWGLTLHS LQHGSYYYLI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658233.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9 isoform X2 | ||||
Swissprot | Q6X7J4 | 6e-89 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A1S3B077 | 0.0 | A0A1S3B077_CUCME; WUSCHEL-related homeobox 9-like isoform X2 | ||||
STRING | XP_008439789.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-59 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.046640.3 |
Entrez Gene | 101218828 |