PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.046480.1

Common Name

Csa_6G518120, LOC101220962

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HB-other

Protein Properties

Length: 1751aa MW: 198230 Da PI: 4.8336

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.046480.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgLt+rq ++WF+ rR k+kk Cucsa.046480.1 31 PKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-18	16	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-16	21	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	27	87	IPR001356	Homeobox domain
SMART	SM00389	6.6E-18	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	31	86	IPR001356	Homeobox domain
CDD	cd00086	1.32E-14	32	87	No hit	No description
SMART	SM00571	1.1E-21	542	601	IPR018501	DDT domain
PROSITE profile	PS50827	16.96	542	601	IPR018501	DDT domain
Pfam	PF02791	5.3E-19	543	598	IPR018501	DDT domain
Pfam	PF05066	2.6E-15	724	791	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-6	932	971	IPR028942	WHIM1 domain
Pfam	PF15613	2.2E-11	1103	1173	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1751 aa Download sequence Send to blast
MEAAASDGEN HNLNNDNINK ISNSSEGLSK PKRQMKTPFQ LETLEKAYAL ETYPSESTRA 60 ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRKVVPAPA LPDSPIDELR VVAEPGSDYA 120 SGSGSGSSPF GDVGLRNAAP RSVGDDMPMM RRYYETSRSV MELRAIACVE SQLGEPLRED 180 GPILGIEFDP LPPDAFGAPI VAEQQKRSGH YEQRDAKSNK VAARGFPEYP FMPDQANIRA 240 DAYGPVSQLH YSDSLGEVSA ARTPSFLHGH EQLNRSHNYH SQVSRVRHMS QQEKQGVTIS 300 SPAEDNAFSL PRDSYPNIRM SSQFTEHPIV GQENSYVLPD GHAFPNDAMI RMERKRKSEE 360 ARLSKEAEAH EIRMRKELEK QDILRKKNEE RMRKEMEKQD RERRREEERL LREKQREAER 420 LKREERREHE RREKFLQREY LRAEKRKQKE AIRKEKEAVR RKAAIEKATA RRIARESMEL 480 IEDEQLELME LAAANKGLSS ILNLDHDTLQ NLESFRDYLG AFPPKSVQLK KPFGIQPWVN 540 SEENIGNLLM VWRFFITFSD VLELWPFTLD EFVQALHDYD SRLLAEIHIC LLRLIVKDIE 600 DVARTPSTGM GMNQNGVANS GGGHPQIVEG AYAWGFDICN WQKHLNPLTW PEIFRQLALS 660 AGHGPQLKKR SLAMSEMRSK DEAKCGEDVV STLRNGSAAE NAFAIMQEKG LLAPRRSRHR 720 LTPGTVKFAA FHVLSLEGSE GLTVLELAEK IQRSGLRDLS TSKTPEASIS VALTRDTKLF 780 ERIAPSTYRV RAPYRKDPDD ADEILSVARK KIQVFQNGFL AGEDADDVER DEESECDDVD 840 EDPEVDDIAT TSLVNEDVSK GDVNLEVENE NLCHDIAGNL QNDIAKDVLP FPLSDSKDAK 900 YLSMPTEQYA AVDDTTISDL DQENMEIDES KEGESWIQGL TEGEYHDLSV EERLNALVVL 960 TSIANEGNSI RLVLEDRLEA ANAVKKQMLT EAQIDKSRLK EEIITKSDFP IHIVSKVEIE 1020 LNGSTMDGGQ SPFPVADNKN NETTPSTAEN HSSVPNERGT LVPDLFPGPD NFLAQQCGHA 1080 SKRSRSQLKS YIAHRAEEMY TYRSLPLGRD RRRNRYWQFV ASSSSNDPGS GRIFVEMYDG 1140 NWRLIDSEEG FDALSLALDT RGIRESHLRI MLQMIETSFK ENVRRNLQCA NEMVQSGITP 1200 KNENDYSSSS PDCTAGFNSP SSTVCGLNLD TMVTSSSFRI ELGRNENEKK NAFRRYQDLQ 1260 RWMLRECFST STLCAMKFGE KRCNSLFDIC DSCLCLFDSQ HSHCPSCHQT FGVGGNDINF 1320 LEHTRHCERE RKSSPLDTHF LDASLPLKSR LLKAFLAFIE VHVPSEAFQS FWTEHRQEWG 1380 VRMKLSSSIE ELLQLLTMFE SVIKRDFLKS DFTTTDEHLS SCSISGNVIH DPADIGSVIT 1440 LPWIPRTSAA VGLRLCEVDA SIYYIGCEKP EPDQDKELGE HINFSSRYVQ VKNDERTKLN 1500 GLDYDDLMKN ENSADPKSLR NSYKRGRGSR DFGRRRKWQK KVNGSRSGRV RQNVKSNEKI 1560 NQGQGELGQG TQLMGIRGRR TVRKRRAEKS IPDEGLSGLV PSSSTQNIDE SPKDYLGEWE 1620 DEKMDRFVDM EDEENVMEDE ENMMEDEENE ENEENVNNVE QMDSDDGQEV GYEQGGWEFG 1680 FEGTSNRWNG DLGIGSDEDV DLSDYNGTEE GGNDDIEELD VDSSEESDCS PNRIGNNGGG 1740 ESAVSDDYSD *

Sequence ? help Back to Top

Protein Sequence Length: 1751 aa Download sequence Send to blast

MEAAASDGEN HNLNNDNINK ISNSSEGLSK PKRQMKTPFQ LETLEKAYAL ETYPSESTRA  60
ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRKVVPAPA LPDSPIDELR VVAEPGSDYA  120
SGSGSGSSPF GDVGLRNAAP RSVGDDMPMM RRYYETSRSV MELRAIACVE SQLGEPLRED  180
GPILGIEFDP LPPDAFGAPI VAEQQKRSGH YEQRDAKSNK VAARGFPEYP FMPDQANIRA  240
DAYGPVSQLH YSDSLGEVSA ARTPSFLHGH EQLNRSHNYH SQVSRVRHMS QQEKQGVTIS  300
SPAEDNAFSL PRDSYPNIRM SSQFTEHPIV GQENSYVLPD GHAFPNDAMI RMERKRKSEE  360
ARLSKEAEAH EIRMRKELEK QDILRKKNEE RMRKEMEKQD RERRREEERL LREKQREAER  420
LKREERREHE RREKFLQREY LRAEKRKQKE AIRKEKEAVR RKAAIEKATA RRIARESMEL  480
IEDEQLELME LAAANKGLSS ILNLDHDTLQ NLESFRDYLG AFPPKSVQLK KPFGIQPWVN  540
SEENIGNLLM VWRFFITFSD VLELWPFTLD EFVQALHDYD SRLLAEIHIC LLRLIVKDIE  600
DVARTPSTGM GMNQNGVANS GGGHPQIVEG AYAWGFDICN WQKHLNPLTW PEIFRQLALS  660
AGHGPQLKKR SLAMSEMRSK DEAKCGEDVV STLRNGSAAE NAFAIMQEKG LLAPRRSRHR  720
LTPGTVKFAA FHVLSLEGSE GLTVLELAEK IQRSGLRDLS TSKTPEASIS VALTRDTKLF  780
ERIAPSTYRV RAPYRKDPDD ADEILSVARK KIQVFQNGFL AGEDADDVER DEESECDDVD  840
EDPEVDDIAT TSLVNEDVSK GDVNLEVENE NLCHDIAGNL QNDIAKDVLP FPLSDSKDAK  900
YLSMPTEQYA AVDDTTISDL DQENMEIDES KEGESWIQGL TEGEYHDLSV EERLNALVVL  960
TSIANEGNSI RLVLEDRLEA ANAVKKQMLT EAQIDKSRLK EEIITKSDFP IHIVSKVEIE  1020
LNGSTMDGGQ SPFPVADNKN NETTPSTAEN HSSVPNERGT LVPDLFPGPD NFLAQQCGHA  1080
SKRSRSQLKS YIAHRAEEMY TYRSLPLGRD RRRNRYWQFV ASSSSNDPGS GRIFVEMYDG  1140
NWRLIDSEEG FDALSLALDT RGIRESHLRI MLQMIETSFK ENVRRNLQCA NEMVQSGITP  1200
KNENDYSSSS PDCTAGFNSP SSTVCGLNLD TMVTSSSFRI ELGRNENEKK NAFRRYQDLQ  1260
RWMLRECFST STLCAMKFGE KRCNSLFDIC DSCLCLFDSQ HSHCPSCHQT FGVGGNDINF  1320
LEHTRHCERE RKSSPLDTHF LDASLPLKSR LLKAFLAFIE VHVPSEAFQS FWTEHRQEWG  1380
VRMKLSSSIE ELLQLLTMFE SVIKRDFLKS DFTTTDEHLS SCSISGNVIH DPADIGSVIT  1440
LPWIPRTSAA VGLRLCEVDA SIYYIGCEKP EPDQDKELGE HINFSSRYVQ VKNDERTKLN  1500
GLDYDDLMKN ENSADPKSLR NSYKRGRGSR DFGRRRKWQK KVNGSRSGRV RQNVKSNEKI  1560
NQGQGELGQG TQLMGIRGRR TVRKRRAEKS IPDEGLSGLV PSSSTQNIDE SPKDYLGEWE  1620
DEKMDRFVDM EDEENVMEDE ENMMEDEENE ENEENVNNVE QMDSDDGQEV GYEQGGWEFG  1680
FEGTSNRWNG DLGIGSDEDV DLSDYNGTEE GGNDDIEELD VDSSEESDCS PNRIGNNGGG  1740
ESAVSDDYSD *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134685.2	0.0	PREDICTED: uncharacterized protein LOC101220962
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0A0KNF2	0.0	A0A0A0KNF2_CUCSA; Homeobox protein
STRING	XP_004155639.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Cucsa.046480.1
Entrez Gene	101220962

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]