PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.046290.1 | ||||||||
Common Name | Csa_6G517940, LOC101204761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 122aa MW: 13835.5 Da PI: 10.4101 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.3 | 1.7e-38 | 19 | 77 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +kcprCds ntkfCyynnyslsqPry+Ck+CrryWt+GG+lrnvPvGgg+rk k+ Cucsa.046290.1 19 PQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTHGGTLRNVPVGGGCRKGKRL 77 5789***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.3E-33 | 21 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.491 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-24 | 23 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence Send to blast |
MQYQDRRLKS VQVQDQVQPQ PQKCPRCDSL NTKFCYYNNY SLSQPRYLCK TCRRYWTHGG 60 TLRNVPVGGG CRKGKRLKQP SQSSNNSSVK PLVQTSASPL PPPQIVPLSL STTTSQHVIY 120 SX |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-172 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-172 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134954.1 | 8e-84 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
Swissprot | Q8LDR0 | 6e-33 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A0A0KLH8 | 2e-82 | A0A0A0KLH8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155647.1 | 3e-83 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-34 | OBF binding protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.046290.1 |
Entrez Gene | 101204761 |