PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.045980.9 | ||||||||
Common Name | Csa_6G517080, LOC101209415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 577aa MW: 63669 Da PI: 8.3484 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.4 | 6.3e-19 | 349 | 448 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ +++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++ Cucsa.045980.9 349 FEKMLSASDAGRIGRLVLPKKCAEAYfpSISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGK 441 89**************************666677788***************9989999999***9.********************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ Cucsa.045980.9 442 LVMGFRK 448 7777776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS01359 | 0 | 48 | 105 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 1.6E-30 | 345 | 453 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 346 | 448 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.24E-21 | 347 | 448 | No hit | No description |
PROSITE profile | PS50863 | 11.35 | 349 | 450 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-20 | 349 | 450 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-16 | 349 | 448 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 577 aa Download sequence Send to blast |
MSSALTTASS SSSPLSSKSC YNSDCKELRP DRSRKGWRLR TGDFAELCDR CASAYEEGRF 60 CETFHLNASG WRCCESCGKR VHCGCIVSAH AFTLLDPGGI ECMTCARKNV ILPLNPAWPP 120 SLLFHSALPD RLKELSVKNW SQLAGSGPVP WRQAPSMFNS SLPSGELHHR APYEVDISAA 180 LNKLNTSERL PVSLEKRKNE DFSERFLNGS LKPCGQDLCE NGTAGGIKCD DKPSSCSNMP 240 KQSSFVKEDS STMQYGLNIP YAPPNEPSAR GRISGTHLRP TPLSSLPKQI HTNLQNGADS 300 SNETQLRNGR PRGESRGKNY LLPRYWPRFT DQELQQISVD SNSVITPLFE KMLSASDAGR 360 IGRLVLPKKC AEAYFPSISQ PEGLPLKVQD AKGKEWIFQF RFWPNNNSRM YVLEGVTPCI 420 QSMQLQAGDT VTFSRLEPEG KLVMGFRKAS ATADQENETN KTKNGAPVHG DAELADPNSW 480 TKVDKSGYIA KEVLGAKPSI SRKRKNSTLG SKSKRLRIDN EDMIELKITW EEAQGLLRPP 540 PNQVPNILVI EGFEFEAYEE APVLGKPSII PPDNTG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-65 | 327 | 456 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-170 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-170 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658199.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300 isoform X3 | ||||
Swissprot | Q0D5G4 | 1e-168 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A0A0KHK1 | 0.0 | A0A0A0KHK1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155579.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21550.1 | 1e-145 | VP1/ABI3-like 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.045980.9 |
Entrez Gene | 101209415 |
Publications ? help Back to Top | |||
---|---|---|---|
|