PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.045980.1
Common NameCsa_6G517080, LOC101209415
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 907aa    MW: 100242 Da    PI: 7.4576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.045980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18349448198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++  +++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++
  Cucsa.045980.1 349 FEKMLSASDAGRIGRLVLPKKCAEAYfpSISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGK 441
                     89**************************666677788***************9989999999***9.********************766.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  Cucsa.045980.1 442 LVMGFRK 448
                     7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359048105IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.103.5E-30345452IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-19346448IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-21347448No hitNo description
PROSITE profilePS5086311.35349450IPR003340B3 DNA binding domain
SMARTSM010191.6E-20349450IPR003340B3 DNA binding domain
PfamPF023621.0E-15349448IPR003340B3 DNA binding domain
PROSITE profilePS5105014.138582632IPR011124Zinc finger, CW-type
PfamPF074961.9E-11587629IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MSSALTTASS SSSPLSSKSC YNSDCKELRP DRSRKGWRLR TGDFAELCDR CASAYEEGRF  60
CETFHLNASG WRCCESCGKR VHCGCIVSAH AFTLLDPGGI ECMTCARKNV ILPLNPAWPP  120
SLLFHSALPD RLKELSVKNW SQLAGSGPVP WRQAPSMFNS SLPSGELHHR APYEVDISAA  180
LNKLNTSERL PVSLEKRKNE DFSERFLNGS LKPCGQDLCE NGTAGGIKCD DKPSSCSNMP  240
KQSSFVKEDS STMQYGLNIP YAPPNEPSAR GRISGTHLRP TPLSSLPKQI HTNLQNGADS  300
SNETQLRNGR PRGESRGKNY LLPRYWPRFT DQELQQISVD SNSVITPLFE KMLSASDAGR  360
IGRLVLPKKC AEAYFPSISQ PEGLPLKVQD AKGKEWIFQF RFWPNNNSRM YVLEGVTPCI  420
QSMQLQAGDT VTFSRLEPEG KLVMGFRKAS ATADQENETN KTKNGAPVHG DVSNIKVKAE  480
LADPNSWTKV DKSGYIAKEV LGAKPSISRK RKNSTLGSKS KRLRIDNEDM IELKITWEEA  540
QGLLRPPPNQ VPNILVIEGF EFEAYEEAPV LGKPSIIPPD NTGERIQWTQ CEDCLKWRKL  600
PASALLPSKW TCSDNSWEPE RSFCSAPQEL STEQLEELLS PGNSVAPVKK MKAAKLEPDN  660
VEALEGLDTL ANLAILGEGE ASQTPGQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT  720
CNVCLTVKRR FRTLMLRREK KQFEKEAETM RQRHKFQDEM FPDRSMDEES LTCSNTSTSK  780
LMEEGKMNDG SDEDPNRNKP STSPFKGQID LNMQPEREEE LSPGSDSGSM MKMLQDTGDR  840
FLEQQRSNSG GTRSSSSDPL EPGGEREHKG ESSSNVIDLS SNNLDADKDH PATLSLNPSA  900
SMSTTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-643274562131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658197.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0A0KHK10.0A0A0A0KHK1_CUCSA; Uncharacterized protein
STRINGXP_004155579.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-155HSI2-like 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]