PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.045610.1 | ||||||||
Common Name | Csa_6G516640, LOC105435954 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GeBP | ||||||||
Protein Properties | Length: 415aa MW: 45436.6 Da PI: 5.7066 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 134 | 5.2e-42 | 180 | 276 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klfqrlwse+Dei++L G+id+ ak+g++ps d++af++f+kks++++v+k ql++KirrLKkK++++ ++ k+g +p+fsk+hdqk felsk+i Cucsa.045610.1 180 KLFQRLWSEDDEIAILNGMIDYSAKKGSDPSLDMNAFHDFIKKSLHVDVTKAQLMDKIRRLKKKYRNNADRGKKGADPTFSKAHDQKGFELSKRI 274 579******************************************************************************************** PP DUF573 96 Wg 97 Wg Cucsa.045610.1 275 WG 276 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.8E-37 | 182 | 276 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MAPKRPSPLD EPPAASSSEE EETSSGEEEE GVSRDGSSSE EEEEDEEETQ TQTQKPKKPS 60 ALPSTSVVEK KPAPKKSDPS TNSQAQFSSS ESGSGSDTDS DTESGRNVKP IASKPMDETP 120 KVKKPRSKPS ASVTPARPSL KKPGETTRDA KRPKKSSEAD ADDGIVAEDD SKKSVDESKK 180 LFQRLWSEDD EIAILNGMID YSAKKGSDPS LDMNAFHDFI KKSLHVDVTK AQLMDKIRRL 240 KKKYRNNADR GKKGADPTFS KAHDQKGFEL SKRIWGGEGF LRTPAVDQLK PNANGTPKKN 300 QRGSTSKALA SLKAELLPSP DAPKEDDKMK VDDCEVPSGC MDGFVAFERS LGAVGLPESF 360 LKPGLELIGQ SKRTELEEEW KKLHLAELEL FLKRTELIRD QTKLILDAYK SSSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658171.1 | 0.0 | PREDICTED: mediator-associated protein 1 | ||||
TrEMBL | A0A0A0KN49 | 0.0 | A0A0A0KN49_CUCSA; Transcription regulator | ||||
STRING | XP_004155594.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 6e-38 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.045610.1 |
Entrez Gene | 105435954 |
Publications ? help Back to Top | |||
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