PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.045610.1
Common NameCsa_6G516640, LOC105435954
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GeBP
Protein Properties Length: 415aa    MW: 45436.6 Da    PI: 5.7066
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.045610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731345.2e-42180276197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                     klfqrlwse+Dei++L G+id+ ak+g++ps d++af++f+kks++++v+k ql++KirrLKkK++++ ++ k+g +p+fsk+hdqk felsk+i
  Cucsa.045610.1 180 KLFQRLWSEDDEIAILNGMIDYSAKKGSDPSLDMNAFHDFIKKSLHVDVTKAQLMDKIRRLKKKYRNNADRGKKGADPTFSKAHDQKGFELSKRI 274
                     579******************************************************************************************** PP

          DUF573  96 Wg 97 
                     Wg
  Cucsa.045610.1 275 WG 276
                     *8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-37182276IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAPKRPSPLD EPPAASSSEE EETSSGEEEE GVSRDGSSSE EEEEDEEETQ TQTQKPKKPS  60
ALPSTSVVEK KPAPKKSDPS TNSQAQFSSS ESGSGSDTDS DTESGRNVKP IASKPMDETP  120
KVKKPRSKPS ASVTPARPSL KKPGETTRDA KRPKKSSEAD ADDGIVAEDD SKKSVDESKK  180
LFQRLWSEDD EIAILNGMID YSAKKGSDPS LDMNAFHDFI KKSLHVDVTK AQLMDKIRRL  240
KKKYRNNADR GKKGADPTFS KAHDQKGFEL SKRIWGGEGF LRTPAVDQLK PNANGTPKKN  300
QRGSTSKALA SLKAELLPSP DAPKEDDKMK VDDCEVPSGC MDGFVAFERS LGAVGLPESF  360
LKPGLELIGQ SKRTELEEEW KKLHLAELEL FLKRTELIRD QTKLILDAYK SSSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658171.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A0A0KN490.0A0A0A0KN49_CUCSA; Transcription regulator
STRINGXP_004155594.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.16e-38DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]