PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.044690.1
Common NameCsa_6G511620, LOC101207883
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 542aa    MW: 60033.7 Da    PI: 6.4154
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.044690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.26e-1271715412374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L++cA+a++++dl+ a+ ++  l +++s +gdp qRl ay++e+L+arl rs+s +yk+l+++e +   sse +++++++++++P++kf++ 
  Cucsa.044690.1 171 QDTLIHCAQAIHDSDLNVATLFMDVLGQMVSVSGDPSQRLGAYLLEGLRARLERSGSAIYKSLKCKEPT---SSELMSYMSILFQICPYFKFGYT 262
                     689*****************************************************************9...999******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      aN  I ea+ +e  +HiiDf+i qG Q+++L+q La+Rp+gpp  lRiTgv++++s   +   l+ +g++La++A++ g+pf+f++ +a +  d
  Cucsa.044690.1 263 SANAVIREAMVNEPIIHIIDFQIAQGSQYISLIQDLANRPGGPPaLLRITGVDDSQSAhaRGGGLQIVGQNLAQLAQSKGIPFQFHA-AAMSGCD 356
                     ****************************************8888789*******9988889999***********************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +e ++L ++pgEalaVn+ + lh+++desvs++++rd++L+lvkslsPkvv+++eqe+++n+++Fl rf+e+l+yy+a+f+s+++  +r++++ri
  Cucsa.044690.1 357 VEHSNLIIQPGEALAVNFPYTLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIIEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRI 451
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       E+++++r+ivn+vaceg+er+erhe l+kWr+r+++aGF+p+++s +++  ++ +lr ++++ yr++e +g+++lgWk+r++ ++SaWr
  Cucsa.044690.1 452 RAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMRMAGFTPYTMSPSVTGAVRNMLRDFNEN-YRLQEVDGAIYLGWKNRAMATASAWR 541
                     **************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.076144522IPR005202Transcription factor GRAS
PfamPF035142.1E-124171541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQASQNRQAS SMIHEMDPYY LSGFHVLGNH VSPDASSQGN SVNFSSYKDQ FFTLESFPAT  60
ADLSGSNSPS TGSVLSSRSP FSPQGSQSCS SDQHHSFENT CGSPMSGCSV TDEDNDIKHK  120
LKELEISLLG PESDIVDSCY CSFRGGAHRD ASVARRNWNQ VVEMIPKLNL QDTLIHCAQA  180
IHDSDLNVAT LFMDVLGQMV SVSGDPSQRL GAYLLEGLRA RLERSGSAIY KSLKCKEPTS  240
SELMSYMSIL FQICPYFKFG YTSANAVIRE AMVNEPIIHI IDFQIAQGSQ YISLIQDLAN  300
RPGGPPALLR ITGVDDSQSA HARGGGLQIV GQNLAQLAQS KGIPFQFHAA AMSGCDVEHS  360
NLIIQPGEAL AVNFPYTLHH MPDESVSTQN HRDRLLRLVK SLSPKVVTII EQESNTNTSP  420
FLLRFIETLD YYTAMFESID VARSRDDKQR IRAEQHCVAR DIVNMVACEG FERVERHELL  480
GKWRMRMRMA GFTPYTMSPS VTGAVRNMLR DFNENYRLQE VDGAIYLGWK NRAMATASAW  540
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-561735417375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134801.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0A0KL300.0A0A0A0KL30_CUCSA; Uncharacterized protein
STRINGXP_004134801.10.0(Cucumis sativus)
STRINGXP_004170199.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]