PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.044270.1 | ||||||||
Common Name | Csa_6G509650, LOC101215892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 200aa MW: 23184.6 Da PI: 10.3168 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.5 | 2e-26 | 76 | 125 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l+dl+k+F pi++A+++L+v+lTvLKr+CR++GI+RWPhRkiks+ Cucsa.044270.1 76 ARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSI 125 78**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.905 | 62 | 145 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.5E-21 | 78 | 125 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MKNGHLSCFP NGELCQLKNG KSHQPRNLPL LDQDLNFLPC SVSVSKESGN QMEESCASVF 60 FEQLEIKRRA TSEHIARITL SDLAKNFGVP ITEASRNLNV GLTVLKRKCR EFGIHRWPHR 120 KIKSIDGLIR DLQEEAKHRE EDHKALMAVT KRQMMLQNER ERIERTPFRE LENETKRFRQ 180 DVFRRKHKAR ALESQSPSV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 6e-99 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 6e-99 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134999.1 | 1e-138 | PREDICTED: protein RKD5-like isoform X2 | ||||
Swissprot | O81791 | 9e-45 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A0A0KGY8 | 1e-137 | A0A0A0KGY8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004158891.1 | 1e-137 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9646 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 4e-47 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.044270.1 |
Entrez Gene | 101215892 |
Publications ? help Back to Top | |||
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