PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.043400.1 | ||||||||
Common Name | Csa_6G505230, LOC101206016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | DBB | ||||||||
Protein Properties | Length: 169aa MW: 18863.5 Da PI: 7.0304 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.5 | 2.8e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++lfC ++ lC+ C ++ H Cucsa.043400.1 4 LCDSCESAPATLFCAADEAALCAICDTKVH 33 6**************************998 PP | |||||||
2 | zf-B_box | 27.4 | 6.9e-09 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Cucsa.043400.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGgkrmHK 92 789***************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.58 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.14E-7 | 3 | 45 | No hit | No description |
SMART | SM00336 | 4.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.4E-7 | 4 | 42 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.674 | 51 | 97 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-9 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 52 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.25E-7 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MRILCDSCES APATLFCAAD EAALCAICDT KVHMCNKLAS RHVRVGLANP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD VIVHVGGKRM HKRYLRLRQR VEFPGDKQND VKDLNVKPTE 120 QVEKVKSQNE ERGENEKHEE LRVSGVTKDY SNGDGHSKRP NKVIDLNM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 6e-83 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 6e-83 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134879.1 | 1e-123 | PREDICTED: B-box zinc finger protein 18 isoform X1 | ||||
Swissprot | Q9SJU5 | 3e-63 | BBX18_ARATH; B-box zinc finger protein 18 | ||||
TrEMBL | A0A0A0KJB1 | 1e-121 | A0A0A0KJB1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004158880.1 | 1e-122 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24698 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21320.1 | 3e-65 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.043400.1 |
Entrez Gene | 101206016 |
Publications ? help Back to Top | |||
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