PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.042780.1 | ||||||||
Common Name | Csa_3G073910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14442.6 Da PI: 4.7027 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.5 | 8.4e-12 | 15 | 105 | 1 | 83 |
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 f+k+lt+ dv+ + grl l k+f++ + +++ e ++ ++++d +gr++++ ++ + ++ yvltk WkeF k n+L g+f+ Cucsa.042780.1 15 FVKQLTKTDVTDNqGRLALHKEFVNLNldpmfndDEDLEDGISVIVYDIEGREYDMIFKLWASK-LYVLTKSWKEFYKTNDLTqPGEFISVW 105 89********99889*********888****999555568899***************989886.89***************8678887544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-15 | 12 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-15 | 13 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-14 | 13 | 108 | No hit | No description |
Pfam | PF02362 | 4.0E-8 | 15 | 121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-6 | 15 | 123 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.037 | 16 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAVIQNIIGE CSPPFVKQLT KTDVTDNQGR LALHKEFVNL NLDPMFNDDE DLEDGISVIV 60 YDIEGREYDM IFKLWASKLY VLTKSWKEFY KTNDLTQPGE FISVWMFRHV VTQKLCFAIM 120 RGQA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 1e-108 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 1e-108 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022145065.1 | 8e-42 | putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A0A0L7L0 | 4e-88 | A0A0A0L7L0_CUCSA; Uncharacterized protein | ||||
STRING | XP_008460492.1 | 6e-68 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 9e-24 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.042780.1 |
Publications ? help Back to Top | |||
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