PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.042310.2
Common NameCsa_3G061550, LOC101220072
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 546aa    MW: 60638.8 Da    PI: 5.7095
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.042310.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.41.9e-1291765442373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e L +cA+a++++d+   ++l+++l+ ++s +g+p+qRl ay++eAL ar a s+s++ykal+++e      +e l+++++++e++P++kf++l
  Cucsa.042310.2 176 KEMLCACARAIDENDMMTGEWLVSELRGMVSVSGEPIQRLGAYLLEALVARTACSGSSIYKALRCKEPI---GAELLSYMHVLYEICPYFKFGYL 267
                     789*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ge+rvHiiDf+i qG QW++LlqaLa+Rp+gpp++ iTg+++++s   +   le +++rL  +Ae+l++pfef+  +a + +++
  Cucsa.042310.2 268 SANGAIAEAIKGENRVHIIDFQIAQGNQWITLLQALANRPGGPPKVTITGIDDSTSAfaRGGGLEIVRKRLLILAESLKIPFEFHG-IAGSASEI 361
                     *****************************************************99889999*************************.6999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+v+pgEa+aV+++l lh+++de+v ++++rd++L+lvkslsPkvv+vve e++ n+++Fl rfl++l+yy+a+f+s++++lpr+++eri+
  Cucsa.042310.2 362 QREDLKVQPGEAIAVSFSLVLHHMPDENVGSQNHRDRILQLVKSLSPKVVTVVELESNNNTAPFLSRFLQTLKYYTAVFESIDVTLPRDHKERIS 456
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+r+ivn+vaceg+er+erhe ++kWr+rl +aGFkp pls ++++++++ll+++ +  y++ee++g+l+lgW +++Lv+ SaW
  Cucsa.042310.2 457 VEQHCLARDIVNLVACEGTERVERHELFRKWRSRLFMAGFKPHPLSPFVNATIEALLKNYCD-KYTLEEKDGALYLGWLNQNLVTSSAW 544
                     ************************************************************95.5************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.335149526IPR005202Transcription factor GRAS
PfamPF035146.5E-127176544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MKEPSRKKVP NQSYGFCEQP LQEPGSCYWP PINHGGGLYS DDVLDQNHLP SESFKQYCNV  60
ESSSGTSSYP HQNSSSTASL TSIGSPSSHQ ECHSYPIDPY YSPDNNCGSP ISRSCLTDDA  120
ADDLRHKIRE LETAMLGPDA DGLDVYSITE PVHPLLPMQD AGWKDVTEII SRRDLKEMLC  180
ACARAIDEND MMTGEWLVSE LRGMVSVSGE PIQRLGAYLL EALVARTACS GSSIYKALRC  240
KEPIGAELLS YMHVLYEICP YFKFGYLSAN GAIAEAIKGE NRVHIIDFQI AQGNQWITLL  300
QALANRPGGP PKVTITGIDD STSAFARGGG LEIVRKRLLI LAESLKIPFE FHGIAGSASE  360
IQREDLKVQP GEAIAVSFSL VLHHMPDENV GSQNHRDRIL QLVKSLSPKV VTVVELESNN  420
NTAPFLSRFL QTLKYYTAVF ESIDVTLPRD HKERISVEQH CLARDIVNLV ACEGTERVER  480
HELFRKWRSR LFMAGFKPHP LSPFVNATIE ALLKNYCDKY TLEEKDGALY LGWLNQNLVT  540
SSAWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-641775446374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149575.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_011650494.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0A0L6540.0A0A0A0L654_CUCSA; Uncharacterized protein
STRINGXP_004149575.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]