PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.041620.1
Common NameCsa_3G043910, LOC101209060
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 659aa    MW: 73233 Da    PI: 5.1623
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.041620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.92.7e-1222636411373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++c+ea+ s++  l+++l+ +l ++asp+g +p++Rl+ay+teALa r++r +++++++ +p+e + + ++++ +al+l++evsPi+kf 
  Cucsa.041620.1 263 LIRLLMACVEAIGSKNIGLITHLIDKLGTQASPRGsSPITRLIAYYTEALALRVSRVWPQVFHITTPREYD-RMEDDTGTALRLLNEVSPIPKFI 356
                     5799*******************************99**************************99999997.5678888999************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taN+++l+a+eg+++vHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled+
  Cucsa.041620.1 357 HFTANEMLLRAFEGKDKVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRITGIGE----SKQELNETGDRLAGFAEALRLPFEFHA-VVDRLEDV 446
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk++E++ Vn++lqlh++l +    +   +++L l++s++P +vv++eqea+hn++++ +r++ +l+yy+a+fdsl+++lp+es++r k
  Cucsa.041620.1 447 RLWMLHVKEQESVGVNCILQLHKTLYDGNGGA--LRDFLGLIRSTNPSIVVMAEQEAEHNEPRLETRVAATLKYYAAVFDSLDTSLPPESSARLK 539
                     *************************6554444..589********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplse.kaakqaklllrkvk..sdgyrve...ee.......sgslvlgWkdr 365
                     vE++ +grei+n +aceg+er erh  ++kW++ +e+  G++ +++ + ++  q + ll++++   +g++v    ee        ++++l+W+d+
  Cucsa.041620.1 540 VEEM-FGREIRNTIACEGRERYERHVGFKKWKKDMEQqGGMQCIRIHDdRELLQTQFLLKMYSsaAHGFNVTkieEEeeeeegtAQAICLTWEDQ 633
                     ****.******************************985789999997615779*********987789999877622456677677889****** PP

            GRAS 366 pLvsvSaW 373
                     pL++vSaW
  Cucsa.041620.1 634 PLYTVSAW 641
                     ******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.81237608IPR005202Transcription factor GRAS
PfamPF035149.2E-120263641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRNRLRSE AQPPFPACHL QLPTSMSTQR LDLPCSFSRS KDASATARSP  60
SIRPVALSVE KQNIRLPPLS ATSQQIKQEF WKGKGKNLKR IAEQVGFDDD DDSSISSAKR  120
KRECRDDTAA DGLILSQFGG GGGSFWFHQP DVDEEGFCFL PGSEVILSPS PFLSEIADLG  180
EENDGEESSH VKAQEASGSG SGSSSSSESE RFALRRRVTT ENVSAATTTV QEIGNGSSRN  240
PSYHHHQASD LENEREEEEG FELIRLLMAC VEAIGSKNIG LITHLIDKLG TQASPRGSSP  300
ITRLIAYYTE ALALRVSRVW PQVFHITTPR EYDRMEDDTG TALRLLNEVS PIPKFIHFTA  360
NEMLLRAFEG KDKVHIIDFD IKQGLQWPSL FQSLASRANP PSHVRITGIG ESKQELNETG  420
DRLAGFAEAL RLPFEFHAVV DRLEDVRLWM LHVKEQESVG VNCILQLHKT LYDGNGGALR  480
DFLGLIRSTN PSIVVMAEQE AEHNEPRLET RVAATLKYYA AVFDSLDTSL PPESSARLKV  540
EEMFGREIRN TIACEGRERY ERHVGFKKWK KDMEQQGGMQ CIRIHDDREL LQTQFLLKMY  600
SSAAHGFNVT KIEEEEEEEE GTAQAICLTW EDQPLYTVSA WSPAEVSGSS SSFNHPTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-612506435379Protein SCARECROW
5b3h_D3e-612506435379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148280.20.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0A0L1Z20.0A0A0A0L1Z2_CUCSA; GRAS family transcription factor
STRINGXP_004162787.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]