PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.041490.1
Common NameLOC101213853
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 386aa    MW: 44488.9 Da    PI: 7.0512
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.041490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.82.1e-117153841373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+++s++d+  a++lL+ ls ++sp+gd++qRl +yf   L++ l +  s+  ++++  +    + ++  + +  +++++P+++f+h
  Cucsa.041490.1  15 MRQLLIRCAHFISQSDFISAHHLLSILSSNSSPYGDSTQRLLHYFSSSLSHLLPS--SNYNSSFHHHHH---DIEKIQSCYLSLNQITPFIRFTH 104
                     589**************************************************99..333333333333...35555555556************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrle 187
                     ltaNqaIle +e++ ++H++Dfdi++G+QWp+L+qaLa+R  ++p+lRiT+ g     + + l++tg+rL+kfA++lg++f+f++l   + ++ +
  Cucsa.041490.1 105 LTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADR-FPSPMLRITATGV----DLNFLHKTGDRLSKFAQSLGLRFQFHPLlllHDRDHH 194
                     ***************************************9.788**********....9**************************9885556899 PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      + + +L + p+EalaVn+vl lhr  + s+   +++  + +L+ +k l+Pkvv+++e+ea+ n++ F++rf+eal++y+ lfdslea+lp++s+
  Cucsa.041490.1 195 RVIPAALTLFPDEALAVNCVLYLHRYGQMSGLwlMKDDVRVLLNKIKALNPKVVTIAEKEANFNHPLFMQRFVEALNHYTLLFDSLEATLPPNSR 289
                     99************************998875225558899****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     er  vE++++grei ++v+ e ++ +++  e++e+W+ +l++ GF+++pls +a +qaklllr ++ s+gy+++  ++sl+lgW+++pL+svS+W
  Cucsa.041490.1 290 ERLAVEQVWFGREINDIVSGEVNKkKQHYAERYESWETMLKSLGFSNIPLSPFALSQAKLLLRLHYpSEGYHLQILHDSLFLGWQNQPLFSVSSW 384
                     ********************99883555679**************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.1471364IPR005202Transcription factor GRAS
PfamPF035147.2E-11515384IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
HQQEPEQQED HCLQMRQLLI RCAHFISQSD FISAHHLLSI LSSNSSPYGD STQRLLHYFS  60
SSLSHLLPSS NYNSSFHHHH HDIEKIQSCY LSLNQITPFI RFTHLTANQA ILEGIEESGM  120
IHVLDFDIMH GVQWPPLMQA LADRFPSPML RITATGVDLN FLHKTGDRLS KFAQSLGLRF  180
QFHPLLLLHD RDHHRVIPAA LTLFPDEALA VNCVLYLHRY GQMSGLWLMK DDVRVLLNKI  240
KALNPKVVTI AEKEANFNHP LFMQRFVEAL NHYTLLFDSL EATLPPNSRE RLAVEQVWFG  300
REINDIVSGE VNKKKQHYAE RYESWETMLK SLGFSNIPLS PFALSQAKLL LRLHYPSEGY  360
HLQILHDSLF LGWQNQPLFS VSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-62173856375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5031270.0EU503127.1 Cucumis sativus GRAS protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295852.10.0scarecrow-like protein 18
RefseqXP_004147990.20.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-119SCL18_ARATH; Scarecrow-like protein 18
TrEMBLG8XQN00.0G8XQN0_CUCSA; GRAS protein
STRINGXP_004159489.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-109GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]