PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.032420.1 | ||||||||
Common Name | Csa_3G236580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HB-other | ||||||||
Protein Properties | Length: 372aa MW: 40626.5 Da PI: 7.2076 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.1 | 2.7e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +ft++++ e+e+ + n p +e LA+k ++ +qV +WFqNrR+ Cucsa.032420.1 13 RFTASEVAEMEAILQGhnNTMPAREVLVALADKFsesverkgkiAVQMKQVWNWFQNRRYAI 74 699999999999999544999*********************999**************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.61E-10 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0019 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.572 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.2E-5 | 13 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.47E-4 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 13 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 7.6E-41 | 126 | 251 | IPR032001 | SAWADEE domain |
CDD | cd00024 | 0.00735 | 138 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MGRPPSNGGP AFRFTASEVA EMEAILQGHN NTMPAREVLV ALADKFSESV ERKGKIAVQM 60 KQVWNWFQNR RYAIRAKTSK APGKLAVSPV VQIESTPVRN VPQTVVVPAP APVGSAKGAP 120 ENPLSEFEAK SGRDGAWYDV ATFLSHRSVE SGDPEVLVRF SGFGSEEDEW VNIRRNIRPR 180 SLPCESSECV AVLPGDLILC FQEGKEQALY FDAHVLDTQR RRHDVRGCRC RFLVRYDHDQ 240 SEEIVQLRKI CRRPETDYRL QQLHAVNEAA SIEPSKSGMD SVLLSGQRIN FETSQNPLSK 300 DAALVIPNAN PHINAHAQTS TQEARNTETN TAPTTFNSAN LAGSSAFSSG IVTNTVSAGS 360 ADNVSDGKLL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 2e-46 | 127 | 255 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-46 | 127 | 255 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-46 | 127 | 255 | 6 | 134 | SHH1 SAWADEE |
4iur_B | 2e-46 | 127 | 255 | 6 | 134 | SHH1 SAWADEE |
4iut_A | 2e-46 | 127 | 255 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-46 | 127 | 255 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-46 | 127 | 255 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-46 | 127 | 255 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-46 | 127 | 255 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-46 | 127 | 255 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 1e-143 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 1e-143 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651298.1 | 0.0 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-137 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A1S3C274 | 0.0 | A0A1S3C274_CUCME; protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
STRING | XP_008456010.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6816 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-122 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.032420.1 |
Publications ? help Back to Top | |||
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