PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.032330.1 | ||||||||
Common Name | Csa_3G238150, LOC101207601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 212aa MW: 23247.7 Da PI: 8.5631 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 6.8e-39 | 20 | 79 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k+++l+cprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGg++rknk+ Cucsa.032330.1 20 KDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRP 79 6899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-25 | 21 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-33 | 21 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.012 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MELEEEGLKA VVERKAKARK DQILNCPRCN SNNTKFCYYN NYSLSQPRYF CKSCRRYWTA 60 GGSLRNIPVG GASRKNKRPS ANFSLPPSKN NQKNYNNDGG DDDDQGISQL NINITSCSST 120 ATTTNTATSC CWLSSDNDHM NNQIMLRSNG IMSQRELIPF IPMPAPAPPQ PTAVAALEDF 180 KQLSTIISTD QNGAKLGDAP AFWSGIFGGG SX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 20 | RKAKARKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 0.0 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146271.1 | 1e-157 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
Refseq | XP_011651310.1 | 1e-157 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
Refseq | XP_011651312.1 | 1e-157 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
TrEMBL | A0A0A0L9J3 | 1e-155 | A0A0A0L9J3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146271.1 | 1e-156 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24484 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-33 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.032330.1 |
Entrez Gene | 101207601 |
Publications ? help Back to Top | |||
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