PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.032230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 231aa MW: 27498.2 Da PI: 7.3264 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.2 | 4.5e-25 | 117 | 163 | 5 | 51 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + le+++ky++ pi +AAke++v+lTvLKr+CRq++I+RWPhRk+ks Cucsa.032230.1 117 LGLEEIKKYYHIPISEAAKEMNVGLTVLKRRCRQLNIMRWPHRKLKS 163 6799******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.03 | 104 | 186 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.7E-23 | 117 | 163 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDSNPQTFHN IPQFDFEWLH EDLFPFHNEL DELPPLDKDE FLDVNSSGSL LSFHLVDNNV 60 LEFESEFLSR EMDEIERKGL SSSTWKEEEE EEEEGEKRLR LMRNNNGNKR RKRSFVLGLE 120 EIKKYYHIPI SEAAKEMNVG LTVLKRRCRQ LNIMRWPHRK LKSYNSLIQN VKEMGLTNEV 180 KGLEEQKRLL VESPNMDLTH TTKRLRQACF KDKYRKNRRL RSNNIASLHH * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681850 | 1e-149 | LN681850.1 Cucumis melo genomic scaffold, anchoredscaffold01597. | |||
GenBank | LN713260 | 1e-149 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466842.1 | 1e-126 | PREDICTED: protein RKD4 | ||||
TrEMBL | A0A1S3CS47 | 1e-125 | A0A1S3CS47_CUCME; protein RKD4 | ||||
TrEMBL | E5GBA6 | 1e-125 | E5GBA6_CUCME; Transcription factor | ||||
STRING | XP_004163842.1 | 1e-168 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-37 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.032230.1 |