PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.031600.1

Common Name

Csa_3G265270

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 288aa MW: 32700 Da PI: 10.3843

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.031600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	146.6	1.8e-45	15	162	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.....eaessss 80 gkkdrhski+T++g+RdRRvRls+++a++fFdLqd+LG+dk+skt+eWL+ ++k+aikel +t + ++ ++++++ Cucsa.031600.1 15 GKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTksgnigvhggakK-----FSlvadsSDVEEEY 104 89***********************************************************7777766543331.....22222112333333 PP TCP 81 sasnsssg......kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134 +++ + k++ s ++k s+++ + ++ lakesrakarararert ek++ +n Cucsa.031600.1 105 DDDK---EgwelkmKSMLSIDeQEKVSKEKVEGFNLLAKESRAKARARARERTMEKKQVDN 162 3332...14567763333333355556666666688889***************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-43	15	159	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.486	16	74	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.397	140	157	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVIPSAPGSG TTGMGKKDRH SKIYTAQGLR DRRVRLSIDI ARKFFDLQDM LGYDKASKTL 60 EWLFSKSKKA IKELSRTKSG NIGVHGGAKK FSLVADSSDV EEEYDDDKEG WELKMKSMLS 120 IDEQEKVSKE KVEGFNLLAK ESRAKARARA RERTMEKKQV DNRKVYGHQK GGAQEVSNHW 180 SKHLNHSTET SNLSMEESSF INKRKIIYSK KFINHDNYSD KSRRDDENAE TSQRKLLDQM 240 KASKRKWKPS IISGSSQRNL LISIDGIPIN LTQNLDTNSN PNYPIAK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-14	21	74	1	54	Putative transcription factor PCF6
5zkt_B	1e-14	21	74	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681856	0.0	LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651364.1	0.0	PREDICTED: transcription factor CYCLOIDEA
Swissprot	Q9FYG7	5e-29	TCP1_ARATH; Transcription factor TCP1
TrEMBL	A0A0A0LCE8	0.0	A0A0A0LCE8_CUCSA; Uncharacterized protein
STRING	XP_008461599.1	1e-165	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-28	TCP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.031600.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]