PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.031350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 365aa MW: 39881.9 Da PI: 8.8575 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100 | 2.3e-31 | 66 | 169 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+ Cucsa.031350.1 66 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 160 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ Cucsa.031350.1 161 AVEAVLKGA 169 ***998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.002 | 65 | 171 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.3E-25 | 66 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAPPSRLYIY YFPSFSPLNI LYTSLLSLLY LPNPFPPIFI LSLHTCFFPF YASLLPLLFF 60 FKMRMSCNGC RVLRKGCSEN CSIRPCLQWI KSPESQANAT VFLAKFYGRA GLMNLINAGP 120 DHLRPAIFRS LLYEACGRIV NPIYGSVGLL WSGSWQLCQA AVEAVLKGAP ITPINSEAAT 180 TGDGPPLKAY DIRHVSKDEN SVASNDGGAN RPVKTRCRFK RSSVKAKASK GIASTVVDES 240 TRPVCSTELN RSSSGESSLS HQSDSRHLEN ESKETESMIS VETAEVSPRP AQSVLFRSES 300 TGGREGVSVP IPQSELALEL TLGMEPVLRA QHVIPMKKRK IEAEVGLRPK SETCNTVLGL 360 DFAA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681856 | 0.0 | LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145641.1 | 0.0 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-104 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A0A0LCG6 | 0.0 | A0A0A0LCG6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004145641.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-101 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.031350.1 |