PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.026600.1
Common NameCsa_5G092910, LOC101208504
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family BBR-BPC
Protein Properties Length: 280aa    MW: 31058.5 Da    PI: 10.0992
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.026600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind333.75.1e-10212791301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 
                     mddd+ + rn+gyyep+  +k +lglqlms+i+erd k     r+  + + + ++++++rd         m++  rd++  +        ++++l
  Cucsa.026600.1   1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSTISERDMKHflpgRDPSV-MVNANGSFHPRDcvvseapvhMNY-VRDNWGGN--------RDRFL 83 
                     9***9999*******99..*******************99*9999999.9***********888888888888.77888777........789** PP

       GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                     ++l++++s        + v+++t+ ++slq      l++++     ++++ a  +ee + +++  k kk++++++ pk++kakk++k +    k+
  Cucsa.026600.1  84 NMLPTNHS--------YPVMPETSGAHSLQI-----LQPPSSS---RDEIAASRVEEPPVKKEGGKAKKRQSSEAGPKAPKAKKPRK-P----KD 157
                     ****9997........8899*******9999.....5555444...33445556555555555555555556667788888888887.2....22 PP

       GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                     ++++   +r+k +kk+idlv+ng+++D+s +P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+s krrgaRiagrKmSqgafkk+LekL
  Cucsa.026600.1 158 TSTAV--QRVKPPKKNIDLVINGIDMDISCIPIPVCSCTGAPHQCYRWGCGGWQSACCTTNISTYPLPMSDKRRGARIAGRKMSQGAFKKVLEKL 250
                     33333..689************************************************************************************* PP

       GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     aa+Gy+++np+DL++hWA+HGtnkfvtir
  Cucsa.026600.1 251 AADGYNFANPIDLRTHWARHGTNKFVTIR 279
                     ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.6E-1121279IPR010409GAGA-binding transcriptional activator
SMARTSM012263.4E-1681279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDDDALNMRN WGYYEPSFKG HLGLQLMSTI SERDMKHFLP GRDPSVMVNA NGSFHPRDCV  60
VSEAPVHMNY VRDNWGGNRD RFLNMLPTNH SYPVMPETSG AHSLQILQPP SSSRDEIAAS  120
RVEEPPVKKE GGKAKKRQSS EAGPKAPKAK KPRKPKDTST AVQRVKPPKK NIDLVINGID  180
MDISCIPIPV CSCTGAPHQC YRWGCGGWQS ACCTTNISTY PLPMSDKRRG ARIAGRKMSQ  240
GAFKKVLEKL AADGYNFANP IDLRTHWARH GTNKFVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654525.10.0PREDICTED: protein BASIC PENTACYSTEINE2
SwissprotQ9SKD01e-109BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A0A0KJH70.0A0A0A0KJH7_CUCSA; Uncharacterized protein
STRINGXP_004167938.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-108basic pentacysteine 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]