PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.025360.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 328aa    MW: 37059.7 Da    PI: 10.1564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.025360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-0679101123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Cucsa.025360.1  79 FVCEICNKGFQRDQNLQLHRRGH 101
                     89*******************88 PP
2zf-C2H220.21.6e-06155177123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+Lk H++t+
  Cucsa.025360.1 155 WKCEKCSKKYAVQSDLKAHQKTC 177
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.78E-978101No hitNo description
Gene3DG3DSA:3.30.160.601.0E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
PfamPF121714.7E-579101IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM0035589120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-6143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.78E-9150176No hitNo description
SMARTSM0035539155175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265155183IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEDQLEEVEQ NNNNNQHQLL NHFLYGSPNG DQTNSHGSSN SLDHHQQRVK KKRNLPGTPD  60
PNAEVIALSP TTLMARNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TGAEVKKRVY  120
VCPEPTCVHH NPARALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDL KAHQKTCGTR  180
EYKCDCGTLF SRRDSFITHR AFCNALTEES NKLKQGILNN NNNNNNIEPI SIISTPKLPH  240
FGTSIMPEFN PYDQKNPFKT LPQELNNSTP TTTTGAPGGL FMVGPRSNNN SSSFSSLKLS  300
STTSSRFSCL YDSKNGCLQV RAKQRRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36151222372Zinc finger protein JACKDAW
5b3h_F9e-36151222372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136179.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-103IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A1S3BT630.0A0A1S3BT63_CUCME; protein indeterminate-domain 2-like
STRINGXP_004136179.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.14e-94C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]