PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.025330.1

Common Name

Csa_7G394710, LOC101205486

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HB-other

Protein Properties

Length: 1072aa MW: 119221 Da PI: 9.3113

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.025330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.7	6.1e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g++ +qV+ +F +R + +k Cucsa.025330.1 69 KRPRDLLNPKAVKYMQTVFSIKDALSKKESREISALFGVKVTQVREFFNSQRSRVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.426	66	126	IPR001356	Homeobox domain
SMART	SM00389	5.4E-4	68	130	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-5	68	128	IPR009057	Homeodomain-like
CDD	cd00086	0.0012	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-5	69	136	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MEVLKDDFSN LEIGSSFDSF QKFLDSQKDL FRSQVDQLQT IVVTQCKLTG VNPLSQEMAA 60 GALSITIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVT QVREFFNSQR 120 SRVRKLVRVS RERSIQSNSC KQLEVGGIAT NNDPSIPIDA VPLNSDAVVP LNSDAPMPLN 180 SEAPVPLYFD TPVPLNTIEP SNVDNGPSCS TQDSELSGID GVDKHFVQTI FSMMQKEETF 240 SGQVKLMEWI LQIQNSSVLC WFLTKGGAII LATWLSQAAA EEQTSLLYVI LEVFCHLPLH 300 KALPVHISAI LQSVNYLRFY RTSDISNRAR ILLSRWSKLL ARSQALKKPN GVKLLTNVQT 360 DMILKQSIGD IMSDESWRSN MDMPENFVTS NVNADNMRKP ESHQTLKLLP ASSDDLNRKN 420 VLGLSSSRFR ERRKVQMVEQ PDQKIAGRNS QAQRSSPASQ GRPMSTDDIQ KAKMRAQFMQ 480 NKYGKTGASN GRTVVKSVNV NKPLHIVSGA SSPASKVSLL PKFEDQKKAV ALFPKFNNKV 540 ETPLHSKIEM DFKDSLGEKC KRVQIQWRMP PEMKLNDLWR VGDGENSKEA GFQKNRNSRE 600 KETFYQTILD IPSNPKEPWD LEMDYDDSLT PEILTEQLPD NESSEAEVRN HVVDAAVPSE 660 VISSQDLKPN AAEPDLELLA VLLKNPELVY ALTSSQAGSL PTEETVQLLD MIKAAGGASN 720 LGGVTRMEKT VEKVEVSLPS PTPSSNAGTS GWKPAALRNP FSQRDSIAES RVALSSPPVD 780 TSSIAVSRIV TPNQQHTAMP PVSHQLPASV SQFSHSQTMI NGCQSHHVIH SHQHQQSIVN 840 SPNVQNPETA LPLRGFPINN QPLVNHLTPA ASSARIEGRS IVKPSFTSNI PERIPISFQS 900 PPSPTPTQMP PIQQQRQQPQ LQPFRSEHPH LHPHHQTRVN ISLPPAEKSA PSLGSWRPRQ 960 QDISSQYNNS GASANQNNDS KFVGGSMGVG RGGPSWGRSD FESWSPENSP VRNQEYNRPD 1020 KGFSEPRINS GRSYGPIDNN QQQQQRQRSP YGYGEQNRYG NNNRRWRDRE Y*

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MEVLKDDFSN LEIGSSFDSF QKFLDSQKDL FRSQVDQLQT IVVTQCKLTG VNPLSQEMAA  60
GALSITIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVT QVREFFNSQR  120
SRVRKLVRVS RERSIQSNSC KQLEVGGIAT NNDPSIPIDA VPLNSDAVVP LNSDAPMPLN  180
SEAPVPLYFD TPVPLNTIEP SNVDNGPSCS TQDSELSGID GVDKHFVQTI FSMMQKEETF  240
SGQVKLMEWI LQIQNSSVLC WFLTKGGAII LATWLSQAAA EEQTSLLYVI LEVFCHLPLH  300
KALPVHISAI LQSVNYLRFY RTSDISNRAR ILLSRWSKLL ARSQALKKPN GVKLLTNVQT  360
DMILKQSIGD IMSDESWRSN MDMPENFVTS NVNADNMRKP ESHQTLKLLP ASSDDLNRKN  420
VLGLSSSRFR ERRKVQMVEQ PDQKIAGRNS QAQRSSPASQ GRPMSTDDIQ KAKMRAQFMQ  480
NKYGKTGASN GRTVVKSVNV NKPLHIVSGA SSPASKVSLL PKFEDQKKAV ALFPKFNNKV  540
ETPLHSKIEM DFKDSLGEKC KRVQIQWRMP PEMKLNDLWR VGDGENSKEA GFQKNRNSRE  600
KETFYQTILD IPSNPKEPWD LEMDYDDSLT PEILTEQLPD NESSEAEVRN HVVDAAVPSE  660
VISSQDLKPN AAEPDLELLA VLLKNPELVY ALTSSQAGSL PTEETVQLLD MIKAAGGASN  720
LGGVTRMEKT VEKVEVSLPS PTPSSNAGTS GWKPAALRNP FSQRDSIAES RVALSSPPVD  780
TSSIAVSRIV TPNQQHTAMP PVSHQLPASV SQFSHSQTMI NGCQSHHVIH SHQHQQSIVN  840
SPNVQNPETA LPLRGFPINN QPLVNHLTPA ASSARIEGRS IVKPSFTSNI PERIPISFQS  900
PPSPTPTQMP PIQQQRQQPQ LQPFRSEHPH LHPHHQTRVN ISLPPAEKSA PSLGSWRPRQ  960
QDISSQYNNS GASANQNNDS KFVGGSMGVG RGGPSWGRSD FESWSPENSP VRNQEYNRPD  1020
KGFSEPRINS GRSYGPIDNN QQQQQRQRSP YGYGEQNRYG NNNRRWRDRE Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659347.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0A0K948	0.0	A0A0A0K948_CUCSA; Uncharacterized protein
STRING	XP_004136181.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Cucsa.025330.1
Entrez Gene	101205486

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]