PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.021440.1
Common NameCsa_1G240590, LOC101211206
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 292aa    MW: 33268.7 Da    PI: 4.9795
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.021440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.96.7e-33141062103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d+ ++ +isw + +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+ +ll++
  Cucsa.021440.1  14 FVLKTYQMVNDPLTDPFISWGSANNSFIVLDPLHFSHTLLPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQFQLLKN 99 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  Cucsa.021440.1 100 IVRRKQS 106
                     ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.4E-4910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3411103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.67E-3211103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-2814103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEPNSGNNDI VAPFVLKTYQ MVNDPLTDPF ISWGSANNSF IVLDPLHFSH TLLPAFFKHN  60
NFSSFVRQLN TYGFRKVDPD RWEFANEWFL RGQFQLLKNI VRRKQSCNKY LVGDQMGDEE  120
LVTEIGRLRK EQRALEEQLE GMKKRLETTE KRPQQMMAFL HKVVEDPEIL PRIMLHKDPT  180
RLQFAEKKRR LMISSSSSSP STTTLTEGDE IEEDSNNQQD FGPNLSSPEV CGPWFIGEAE  240
GNLGIPIPTV QAIDIGISSN GGERKYLTEM TVEETYPPPP PYPFSLFGCG F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-23310318129Heat shock factor protein 1
5d5v_B4e-23310318129Heat shock factor protein 1
5d5v_D4e-23310318129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818100.0LN681810.1 Cucumis melo genomic scaffold, anchoredscaffold00077.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150385.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV522e-84HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0A0LWD50.0A0A0A0LWD5_CUCSA; Uncharacterized protein
STRINGXP_004169202.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-81heat shock transcription factor C1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]