PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.018420.1 | ||||||||
Common Name | CUM26 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19697.6 Da PI: 8.6595 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.7 | 7.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ vLCda+v+++if+s+gk++ey+s Cucsa.018420.1 9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 58.5 | 2.9e-20 | 64 | 125 | 37 | 98 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 hl Ged++sL++keL+ Le++Le++l+ +R+k++e+++++ + +++e+e+++ n +L +k Cucsa.018420.1 64 HLRGEDITSLNYKELMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKE 125 99********************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.791 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.40E-37 | 2 | 62 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-29 | 3 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.448 | 41 | 127 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.7E-13 | 62 | 120 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MARGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AQVSLVIFAS SGKMHEYCSP 60 STPHLRGEDI TSLNYKELMA LEEALENGLT GVREKQSEFM KMMRTNERMM EEENKRLNYE 120 LYQKEMVAMG DSVREMDIGY NQRMRDFNSQ MPFAFRVQPI QPNLQERE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 7e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 7e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 7e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF043255 | 1e-178 | AF043255.1 Cucumis sativus MADS box protein 26 (CUM26) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001292651.1 | 1e-113 | floral homeotic protein PMADS 2 | ||||
Swissprot | Q0HA25 | 6e-80 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | Q9ZTQ9 | 1e-112 | Q9ZTQ9_CUCSA; MADS box protein 26 | ||||
STRING | XP_004142638.1 | 1e-114 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 3e-51 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.018420.1 |
Entrez Gene | 101222239 |
Publications ? help Back to Top | |||
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