PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.018350.1

Common Name

Csa_4G358670, LOC105435258

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 964aa MW: 106349 Da PI: 6.2602

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.018350.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	551	571	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++ + G C+ Gd+CkF+H+ Cucsa.018350.1 551 YCRHYVK-GRCQEGDKCKFSHD 571 6****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.77	546	573	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-6	546	571	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8E-4	547	572	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-4	550	571	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-4	552	571	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.033	575	601	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.817	575	602	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.036	603	627	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.53E-5	604	633	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.291	605	628	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	606	626	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MEEVPKLVES KLLFPPHRRM SETYHTLVRI LSPFCENADV SLATEFDPQQ LRAAYCSNMR 60 QATVEPSCQE VIKDSVRVET GDLPIEKATV VEDKSAQDSK VMDFIKDMPI VERRDNVSDQ 120 RRTLEARSED NHCVYEENQT NKAEAEHIVE GNMMLVDDNS CSNVRTSIQT NGGNDQILPE 180 NLQEEIVEHQ QVMEEEDAVS IVPKPSGTLL SLDGHMIQEA SKQEEENQEN ILSIVDKDMQ 240 KLSESHPKEL KSESIVCKPD LEREKSYISS IVEVMDVDDK EQCSENDFGA NPSSMDKEIP 300 RGIYEQCKNS EDKAITVDIV TSKVEHTMLP EAIEMDKYMT ENGDIEEGEI CGETNEISED 360 PAVLTEKVFG IQISKETMNR SKLPLIQANG EANKPVSFFF DKAVYASHEN REEFKSKQDK 420 SSMDACKYKS IVSENRVTST NEDESDFILE ERGYTGKDSG IKKDVDSFTA RFSNQVPCSQ 480 VPEEYATGRK QTVSVEKETG ASNKKKRGSL SEGKKERKKI QKRKKRAEKN RKAGVKRLKL 540 HPVTVPKPVV YCRHYVKGRC QEGDKCKFSH DTTPLTKSTP CSYFARHSCM KGGDCPFDHQ 600 LSKYSCTNFV SNGSCPRGDT CMFSHKILPQ ESTSTSNLKT ESKPPGITDS LDTQKQSNIS 660 GRLKQILVNV PNSTGTSCNR TPLGGALLKK MTGPPPNGIK FLSFGKSSDI SSQVKNDNVE 720 CGNVLAQSGV CSVEKSNESL GKIQLNTAPK GINFLSFGKT LLHSNRENLA TPSSDNGDSI 780 SSGNQIQDVS KTGHDSNEPL KKVQMTTPKQ TNFLSPIGNY ASNEMVSSSS NLKAGTDLFV 840 QNKGNVWDKH EGLSAVLLRP PGTPISSGQL SDILASSISK GTPKSAQKAL LSTLAFAAKH 900 DSFMNKGKSS AFPSLGNGGS KDSGNENICG SLKNDQAKAS KLIDILHLHM INKEQPLLEK 960 AIR*

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MEEVPKLVES KLLFPPHRRM SETYHTLVRI LSPFCENADV SLATEFDPQQ LRAAYCSNMR  60
QATVEPSCQE VIKDSVRVET GDLPIEKATV VEDKSAQDSK VMDFIKDMPI VERRDNVSDQ  120
RRTLEARSED NHCVYEENQT NKAEAEHIVE GNMMLVDDNS CSNVRTSIQT NGGNDQILPE  180
NLQEEIVEHQ QVMEEEDAVS IVPKPSGTLL SLDGHMIQEA SKQEEENQEN ILSIVDKDMQ  240
KLSESHPKEL KSESIVCKPD LEREKSYISS IVEVMDVDDK EQCSENDFGA NPSSMDKEIP  300
RGIYEQCKNS EDKAITVDIV TSKVEHTMLP EAIEMDKYMT ENGDIEEGEI CGETNEISED  360
PAVLTEKVFG IQISKETMNR SKLPLIQANG EANKPVSFFF DKAVYASHEN REEFKSKQDK  420
SSMDACKYKS IVSENRVTST NEDESDFILE ERGYTGKDSG IKKDVDSFTA RFSNQVPCSQ  480
VPEEYATGRK QTVSVEKETG ASNKKKRGSL SEGKKERKKI QKRKKRAEKN RKAGVKRLKL  540
HPVTVPKPVV YCRHYVKGRC QEGDKCKFSH DTTPLTKSTP CSYFARHSCM KGGDCPFDHQ  600
LSKYSCTNFV SNGSCPRGDT CMFSHKILPQ ESTSTSNLKT ESKPPGITDS LDTQKQSNIS  660
GRLKQILVNV PNSTGTSCNR TPLGGALLKK MTGPPPNGIK FLSFGKSSDI SSQVKNDNVE  720
CGNVLAQSGV CSVEKSNESL GKIQLNTAPK GINFLSFGKT LLHSNRENLA TPSSDNGDSI  780
SSGNQIQDVS KTGHDSNEPL KKVQMTTPKQ TNFLSPIGNY ASNEMVSSSS NLKAGTDLFV  840
QNKGNVWDKH EGLSAVLLRP PGTPISSGQL SDILASSISK GTPKSAQKAL LSTLAFAAKH  900
DSFMNKGKSS AFPSLGNGGS KDSGNENICG SLKNDQAKAS KLIDILHLHM INKEQPLLEK  960
AIR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	504	525	KKRGSLSEGKKERKKIQKRKKR
2	516	538	RKKIQKRKKRAEKNRKAGVKRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681867	0.0	LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653770.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
Refseq	XP_011653771.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
TrEMBL	A0A0A0L0H4	0.0	A0A0A0L0H4_CUCSA; Uncharacterized protein
STRING	XP_008444223.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6650	23	23

Link Out ? help Back to Top
Phytozome	Cucsa.018350.1
Entrez Gene	105435258

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]