PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.016540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 153aa MW: 17579.7 Da PI: 10.476 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.6e-18 | 8 | 53 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W+ +a++++ gR++k+c++rw++ Cucsa.016540.1 8 RGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQ-GRSGKSCRLRWFNQ 53 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.2e-19 | 60 | 103 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l++a+ +G++ W++Iar ++ gRt++ +k++w+ Cucsa.016540.1 60 RRPFTEEEEERLLEAHGIHGNK-WALIARLFP-GRTDNAVKNHWHV 103 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.716 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.38E-30 | 6 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-14 | 7 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-17 | 8 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 9 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.31E-13 | 11 | 52 | No hit | No description |
PROSITE profile | PS51294 | 28.137 | 55 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-16 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 60 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 62 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.40E-6 | 74 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence Send to blast |
DDVKSCPRGH WRPAEDEKLR QLVQQHGPQN WNFVAEKLQG RSGKSCRLRW FNQLDPRINR 60 RPFTEEEEER LLEAHGIHGN KWALIARLFP GRTDNAVKNH WHVIMARKQR QQSNNNNLST 120 RKKITNITAA EDCSADSGSR NFETLTTGGI IT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-33 | 3 | 108 | 2 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681817 | 1e-131 | LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015. | |||
GenBank | LN713257 | 1e-131 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022753591.1 | 7e-72 | trichome differentiation protein GL1-like | ||||
Refseq | XP_028084369.1 | 9e-72 | transcription factor MYB56-like | ||||
Swissprot | Q5NBM8 | 5e-64 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A1S4CZL1 | 7e-70 | A0A1S4CZL1_TOBAC; transcription factor LAF1-like | ||||
TrEMBL | A0A1U7VS80 | 7e-70 | A0A1U7VS80_NICSY; transcription factor LAF1-like | ||||
TrEMBL | A0A2R6Q2F6 | 6e-70 | A0A2R6Q2F6_ACTCH; Transcription factor like | ||||
STRING | XP_004145412.1 | 2e-82 | (Cucumis sativus) | ||||
STRING | XP_004167352.1 | 2e-82 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73410.1 | 4e-61 | myb domain protein 54 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.016540.1 |