PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.016480.1
Common NameCsa_2G228420, LOC101212281
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 350aa    MW: 40192.5 Da    PI: 5.8311
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.016480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33431342102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+++i++d+ ++++isw + g sf+v+d++ f+ ++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+k+ll++
  Cucsa.016480.1  43 FLIKTFDIVDDPLTDHIISWGRGGISFIVWDPKAFSANLLPRFFKHNNFSSFIRQLNTYGFRKINPER---------WEFANEGFLRGQKHLLRT 128
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+k 
  Cucsa.016480.1 129 IKRRKP 134
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3339132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-5739132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-3043132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNPQYPVKEE DWGPSSSEFG GGYGLPPTPQ PMEGLNDVSP PPFLIKTFDI VDDPLTDHII  60
SWGRGGISFI VWDPKAFSAN LLPRFFKHNN FSSFIRQLNT YGFRKINPER WEFANEGFLR  120
GQKHLLRTIK RRKPPTTDHL PSEQEPSACV EIGRFGLDVE LDRLKRDKQV VMMELVKLRR  180
EQQNTRAYIQ AMEQKLQGTE MKQRQMMKFL ARAMQNPDFV HQLIQQKKKR DIEEASTKKR  240
RRPIDQGPAS SSRSSEEESI SNIKIEPIEF CGYEVSELEA LALEMQGLGR AVKKETKVKE  300
EMQQSSENGD AELDEGFWEE FFSGRIEEGE NDDMVKALSN RFGYLGSIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-232113210129Heat shock factor protein 1
5d5v_B2e-232113210129Heat shock factor protein 1
5d5v_D2e-232113210129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227241KKRDIEEASTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004154162.10.0PREDICTED: heat stress transcription factor A-7a
RefseqXP_011649187.10.0PREDICTED: heat stress transcription factor A-7a
RefseqXP_011649188.10.0PREDICTED: heat stress transcription factor A-7a
SwissprotQ8H7Y61e-115HFA2D_ORYSJ; Heat stress transcription factor A-2d
SwissprotQ9LUH81e-114HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0A0LNX50.0A0A0A0LNX5_CUCSA; Uncharacterized protein
STRINGXP_004164906.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-113heat shock transcription factor A6B
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]