PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.014000.1 | ||||||||
Common Name | Csa_5G352090, LOC101214586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 238aa MW: 24430.5 Da PI: 10.5726 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.9 | 2.9e-37 | 13 | 86 | 2 | 74 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ Cucsa.014000.1 13 PVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStI 86 579*************************************************************9999977731 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.992 | 19 | 73 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-32 | 19 | 99 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
GNQSSNNAAT PLPVKKPPSK DRHSKVDGRG RRIRMPIVCA ARVFQLTREL GHKSDGQTIE 60 WLLRQAEPSI IAATGTGTTP ASFSTISASL RTPPAASLSD HKPLLPPAPF ILGKRVRTDD 120 DGANKDDTGG AGAGISVGPS IGSIMGPAVA GGYWAIPARS DFGQVWSFAA AAAAAAAPEM 180 VIQPTAVSHQ ASLFVQQQSM GEASAAKVGN YLPGHLNLLA SLSGGPGSSG RRDNDHR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681859 | 0.0 | LN681859.1 Cucumis melo genomic scaffold, anchoredscaffold00078. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149871.1 | 1e-171 | PREDICTED: transcription factor TCP21 | ||||
Swissprot | Q9FMX2 | 2e-86 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0A0KMY3 | 1e-170 | A0A0A0KMY3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149871.1 | 1e-170 | (Cucumis sativus) | ||||
STRING | XP_004166070.1 | 1e-170 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-65 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.014000.1 |
Entrez Gene | 101214586 |
Publications ? help Back to Top | |||
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