PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.013980.1

Common Name

Csa_5G352590, LOC101216268

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 770aa MW: 85804.6 Da PI: 4.4886

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.013980.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.8	1.4e-09	612	654	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +W++ + e++++av+q+G++ + I + ++ g+t+ q+k+++ Cucsa.013980.1 612 RTKWSKSDTERFYEAVRQFGTD-FCMIQQLFP-GKTRRQIKLKFK 654 789*****************.*****.*******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	4.6E-27	605	689	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-6	609	655	IPR009057	Homeodomain-like
SMART	SM00717	9.0E-8	611	659	IPR001005	SANT/Myb domain
CDD	cd00167	4.89E-7	614	654	No hit	No description
SuperFamily	SSF46689	4.41E-10	614	661	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MDPFDDIFSE RVVTARAGVR FQPKTKPRPK KQTLAPQLSA KSQDIKGTIL DAKSCPDDKG 60 NTKSIKSSSQ LPVTEEKRES EDGLLSGTAR SDFIGCSLPT SVESDKVVDS TQFDLDCCGS 120 LLPSGSTIED GVTDAIDFTT SPSGPVGVKK LTDDNKNSEL LTYSHPSASS AHEAMTVDQG 180 GIGSIQSEDV HSIDGKIAGQ NIDLFYELEC LDDFHNQPQN EDDPSSLKQA TISNEGGDLD 240 KQRLEIEECG AVANVTMDTL SSVTTTPSER SACKYIPKPK MRTAGDACTQ ISQPEISNML 300 PPSPQVISCD TNGMNEASIG THSDGVLNDS SINFDGYAPV NQDTETPVNV ESFTFDSYGD 360 ILVDDFNSDD QDAMLREENG KNDEEEPSRQ SNVSQQQKIC PSVGEEIEHS KTSRKLRKKV 420 SHQLDEPEDG VDVNRKFPNE PSSNSGMHGN GYNKNENPKG GQGRKTSTKS SKPSSENEKP 480 TRKRKEANKA VPDLQAEKRP KKFSHSTRRN RRQVNKVLLE TPEDDIDFQK ISFRDLIIYH 540 EHKEKLEKKV ASTRKSETNQ RTDTSAEEIY NDGEENLASE QGKGTDDDEM PDVVDMTSAY 600 FNYQSFMDKT PRTKWSKSDT ERFYEAVRQF GTDFCMIQQL FPGKTRRQIK LKFKSEERHH 660 PFRLSDAITN RAKDHSQFLS LIEQLKEAAK AKHESNQDEL TENTGDEEQP ELSPQTNEEE 720 VEQPEGVEET EKKEFVGGEI HSPLKGEGSD DDDDDDDDPN RWDEYKFDY*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MDPFDDIFSE RVVTARAGVR FQPKTKPRPK KQTLAPQLSA KSQDIKGTIL DAKSCPDDKG  60
NTKSIKSSSQ LPVTEEKRES EDGLLSGTAR SDFIGCSLPT SVESDKVVDS TQFDLDCCGS  120
LLPSGSTIED GVTDAIDFTT SPSGPVGVKK LTDDNKNSEL LTYSHPSASS AHEAMTVDQG  180
GIGSIQSEDV HSIDGKIAGQ NIDLFYELEC LDDFHNQPQN EDDPSSLKQA TISNEGGDLD  240
KQRLEIEECG AVANVTMDTL SSVTTTPSER SACKYIPKPK MRTAGDACTQ ISQPEISNML  300
PPSPQVISCD TNGMNEASIG THSDGVLNDS SINFDGYAPV NQDTETPVNV ESFTFDSYGD  360
ILVDDFNSDD QDAMLREENG KNDEEEPSRQ SNVSQQQKIC PSVGEEIEHS KTSRKLRKKV  420
SHQLDEPEDG VDVNRKFPNE PSSNSGMHGN GYNKNENPKG GQGRKTSTKS SKPSSENEKP  480
TRKRKEANKA VPDLQAEKRP KKFSHSTRRN RRQVNKVLLE TPEDDIDFQK ISFRDLIIYH  540
EHKEKLEKKV ASTRKSETNQ RTDTSAEEIY NDGEENLASE QGKGTDDDEM PDVVDMTSAY  600
FNYQSFMDKT PRTKWSKSDT ERFYEAVRQF GTDFCMIQQL FPGKTRRQIK LKFKSEERHH  660
PFRLSDAITN RAKDHSQFLS LIEQLKEAAK AKHESNQDEL TENTGDEEQP ELSPQTNEEE  720
VEQPEGVEET EKKEFVGGEI HSPLKGEGSD DDDDDDDDPN RWDEYKFDY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	1e-166	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	1e-166	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655158.1	0.0	PREDICTED: uncharacterized protein LOC101216268
TrEMBL	A0A0A0KPZ2	0.0	A0A0A0KPZ2_CUCSA; Uncharacterized protein
STRING	XP_004157041.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-38	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cucsa.013980.1
Entrez Gene	101216268

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]