PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.013870.3 | ||||||||
Common Name | Csa_5G353650, LOC101213142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 31215.7 Da PI: 6.9181 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.2 | 1.2e-10 | 12 | 55 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a + ++ + +W++Ia ++ g+t +++k+++ Cucsa.013870.3 12 WSLEQDKAFENALASHPEDdsdRWEKIAVDVP-GKTIEEIKHHYE 55 ********************************.**********96 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.2e-13 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Cucsa.013870.3 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.6E-8 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-10 | 10 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-4 | 11 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-8 | 12 | 58 | No hit | No description |
PROSITE profile | PS50090 | 6.597 | 12 | 58 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.0E-8 | 12 | 55 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.581 | 114 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-16 | 117 | 172 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-10 | 119 | 169 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.6E-17 | 119 | 169 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-11 | 122 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.38E-10 | 122 | 167 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 122 | 165 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MTVDEAGSSS LWSLEQDKAF ENALASHPED DSDRWEKIAV DVPGKTIEEI KHHYELLVED 60 VNLIESGCVP LPSYSSSSDG SANHAGDEGT TKKNGHFGNC NGDSNHGSKT SRSDQERRKG 120 IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKERRRS 180 SIHDITSVAN GDISAAQGPI TGQANGSGAA PSGKPTKQPP QSAAGPPGVG MYGGPTMGQP 240 VGGPLVSAVG TPVSLPAPAH MAYGVRAPVP GTVVPGAPVN MGPMTYPMPP TSAHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-19 | 7 | 77 | 6 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149865.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_011655162.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_011655163.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_011655164.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_011655165.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_011655166.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 1e-128 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A0A0KTA8 | 0.0 | A0A0A0KTA8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149865.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004172523.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-114 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.013870.3 |
Entrez Gene | 101213142 |
Publications ? help Back to Top | |||
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