PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.011680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 71aa MW: 7630.15 Da PI: 10.0668 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 38.2 | 4.2e-12 | 27 | 67 | 2 | 47 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 C aCk+l++ C+lapyfp +q+ kf ++h++F++sn++kll Cucsa.011680.1 27 CMACKILEK-----CILAPYFPPSQSFKFTIAHRIFSTSNIIKLLL 67 999999998.....*****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.627 | 20 | 70 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-9 | 27 | 67 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
RLQLSQSPPS SPSPSSIVQA SVVVSLCMAC KILEKCILAP YFPPSQSFKF TIAHRIFSTS 60 NIIKLLLVLP * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 1e-32 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 1e-32 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463550.1 | 5e-19 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-15 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-15 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A1S3CK12 | 1e-17 | A0A1S3CK12_CUCME; LOB domain-containing protein 1-like | ||||
STRING | XP_008463550.1 | 2e-18 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-16 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.011680.1 |