PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.011620.1
Common NameCsa_5G527900, LOC101218143
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 300aa    MW: 33326.4 Da    PI: 8.4155
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.011620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.27.1e-3274130259
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     ++++YkeClkNhAas+Gg+a+DGCgEfmps geeg+++al+C AC+CHRnFHR+e e 
  Cucsa.011620.1  74 KHIKYKECLKNHAASMGGNATDGCGEFMPS-GEEGSIEALTCLACNCHRNFHRKEIEG 130
                     5789*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.0E-2976128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-3177128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.17278127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2380131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.33E-20216284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-31218285IPR009057Homeodomain-like
TIGRFAMsTIGR015658.5E-28223279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
LTTHDPPIPI PIPIPLNSRY AGHDHDHNHD HDHIIHHHDS SSTRNHIISA TVNGGNQMEV  60
DLHHHTNNNN NNKKHIKYKE CLKNHAASMG GNATDGCGEF MPSGEEGSIE ALTCLACNCH  120
RNFHRKEIEG EPYDWLHHSR LGRKLLVGGK NMIGPPEPAA FAYPTAGGAT FISSRAATTQ  180
PHHMIMSYNM LGGGGGHSES EEQEEGMGAG VGGRVYSGAM MNKKRFRTKF TAEQKEKMLR  240
FAEKVGWKIQ KQEESVVQQF CQEIGVKRRV LKVWMHNNKH NLAKKDTMSP SHSPNNPLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242242811875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819100.0LN681910.1 Cucumis melo genomic scaffold, anchoredscaffold00056.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142854.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S01e-70ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A0A0KSI70.0A0A0A0KSI7_CUCSA; Uncharacterized protein
STRINGXP_004142854.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-66homeobox protein 31
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]