PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.006260.1
Common NameCsa_5G421370, della2, LOC101213911
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 604aa    MW: 65927.2 Da    PI: 5.0299
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.006260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.92.8e-1362305961374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++++la+al++++  la++++ +m+++a+yf++ALa+r++r    +y+      +s    s+ l++   f+e++P+lkf+h
  Cucsa.006260.1 230 LVHALMACAEAVQQENMKLADALVKHIGFLATSQAGAMRKVATYFAQALARRIYR----IYSPQDGLYSS---YSDPLQM--HFYETCPYLKFAH 315
                     689****************************************************....77544333333...5566555..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taNqaIlea++++ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++  + +l+++g++La++Ae++gv+fefn +v+++l+dl
  Cucsa.006260.1 316 FTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPEnAAGSLQQVGWKLAQMAEAIGVDFEFNHIVCSNLADL 410
                     ********************************************************998999********************************* PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280
                     ++ +L+++p   Ea+aVn+v+ lhrll++++++e+    vL  +k+++Pk+v++veqea+hn++ Fl+rf+eal+yys lfdsle + +  +  +
  Cucsa.006260.1 411 DPAALEIRPsaVEAVAVNSVFDLHRLLARPGAIEK----VLGSIKTTKPKIVTIVEQEANHNGPIFLDRFTEALHYYSNLFDSLEGSSSGFEpgS 501
                     *********999***********************....*********************************************88755544679 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e++ +++++lg++i+nvvaceg++r+erhe+l++Wr+r+e++GF pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  Cucsa.006260.1 502 EDVLLSEVYLGKQICNVVACEGTNRVERHESLSQWRSRMESSGFDPVHLGSNAFKQASMLLALFAgGEGYRVEENNGCLMLGWHTRPLIATSAWQ 596
                     **********************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011298.8E-3655128No hitNo description
PfamPF120419.2E-3755122IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.301204575IPR005202Transcription factor GRAS
PfamPF035149.7E-134230596IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MKRELEDDRS TTPGDAPRIV KGDSSSMSSG KLKMWQPHEE DEGKDAKDGA AGGMDELLAV  60
LGYKVRSSDM ADVALKLEQL EMVMGTAYEH GISHLASDTV HYNPSDLSSW VQNMLSEFNN  120
STNHFNPPPQ SSPYSNSPHP IQSTKSCFYD DDSEYDLSAI PGVAVLPPKD ETQTNSRKRL  180
KIETQSSSVN LLPSPSSSSP PFASTPRIAS ESSRPVIVVE EDSQETGIQL VHALMACAEA  240
VQQENMKLAD ALVKHIGFLA TSQAGAMRKV ATYFAQALAR RIYRIYSPQD GLYSSYSDPL  300
QMHFYETCPY LKFAHFTANQ AILEAFATAA RVHVIDFSLN QGMQWPALMQ ALALRPGGPP  360
AFRLTGIGPP QPENAAGSLQ QVGWKLAQMA EAIGVDFEFN HIVCSNLADL DPAALEIRPS  420
AVEAVAVNSV FDLHRLLARP GAIEKVLGSI KTTKPKIVTI VEQEANHNGP IFLDRFTEAL  480
HYYSNLFDSL EGSSSGFEPG SEDVLLSEVY LGKQICNVVA CEGTNRVERH ESLSQWRSRM  540
ESSGFDPVHL GSNAFKQASM LLALFAGGEG YRVEENNGCL MLGWHTRPLI ATSAWQLAPD  600
ESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-682185957378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6800700.0HE680070.1 Cucumis sativus della2 gene for gibberellin DELLA protein, cultivar Hokus, clone cl42.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140302.20.0PREDICTED: DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLW6JQR40.0W6JQR4_CUCSA; Gibberellin DELLA protein
STRINGXP_004155733.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]