PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.002880.1
Common NameCsa_4G196810
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 815aa    MW: 88311.3 Da    PI: 6.4595
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.002880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.43.8e-1294327912374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alpps  ++++s++ ++a+++f+ +sP++kfsh+
  Cucsa.002880.1 432 LTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQIFNGISPFVKFSHF 526
                     579******************************************************************************************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s+e le+tg+rL++fAe+lg+pf+f + va+++ +l+l
  Cucsa.002880.1 527 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SQEVLEATGKRLTEFAEKLGLPFDFFP-VADKIGNLDL 616
                     *****************************************************....9**************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV+++   h+l++ ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer+ vE
  Cucsa.002880.1 617 ERLNVSKREAVAVHWMQ--HSLYEVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-TGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVE 704
                     ****************9..999988888888....**********************.889********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaW+
  Cucsa.002880.1 705 QQLLSREIRNVLAVGGPSRSGEVK-FQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWK 791
                     ******************888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.786405771IPR005202Transcription factor GRAS
PfamPF035141.3E-126432791IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MAAYALLNDS TPRGVNGGFD DSPLTSASTN SNGSDELNHQ QIVQVPQPRL PVGKMVRKRI  60
ASEMEIEGLD SGGGGGGGGS GGTTAVHPRF CRRSLASDRP FGENKTNLNY CSSSNPSHGG  120
NHSTVVHNLT ALTSVVIEGS NLSNPPSGSD ATVSSTTSNN NLLDSTLPVL RPQPHHHHLQ  180
NPAVCGFSGL PLFPPESNHH HNKLNTRNNP FPLPNPSQVL LHNPPTTATT SIIAAASSPM  240
DDSSATAWID GIIKDLIHSS TAISIPQLIQ NVREIIYPCN PNLANLLEFR LRTLTDPSVP  300
NFATEDHRVR KSPLPLPAPV AGLGLQQRQF NQEQHEQEHD CSGLKLNLDS TSLHNLSNFP  360
SQPPFHEPYL QWGATPPPVP TPSAAAAGED ALQRLPAPPS TSNNPSATAL LIREIKEEMR  420
QQKRDEEGLH LLTLLLQCAE AVSADNLEEA NKMLLEISEL STPFGTSAQR VAAYFSEAMS  480
ARLVSSCLGI YAALPPSLVP HTHSQKIASA FQIFNGISPF VKFSHFTANQ AIQEAFEREE  540
RVHIIDLDIM QGLQWPGLFH ILASRPGGPP YVRLTGLGTS QEVLEATGKR LTEFAEKLGL  600
PFDFFPVADK IGNLDLERLN VSKREAVAVH WMQHSLYEVT GSDSNTLWLL QRLAPKVVTV  660
VEQDLSHTGS FLGRFVEAIH YYSALFDSLG VSYGEESEER HLVEQQLLSR EIRNVLAVGG  720
PSRSGEVKFQ NWREKLQQSG FKGISLAGNA ATQATLLLGM FPSDGYTLVE DNGTLKLGWK  780
DLCLLTASAW KPPFHHHAAA AAAAAVTNNH IPRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.04167923379Protein SCARECROW
5b3h_D0.04167923379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8703060.0AJ870306.1 Cucumis sativus mRNA for SCARECROW (scr gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463324.20.0PREDICTED: protein SCARECROW 1
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A0A0KWH90.0A0A0A0KWH9_CUCSA; Uncharacterized protein
STRINGXP_004163982.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]