PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.4.828.1 | ||||||||
Common Name | COCSUDRAFT_9603 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | MYB | ||||||||
Protein Properties | Length: 102aa MW: 12062.6 Da PI: 10.5493 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.9e-18 | 2 | 47 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W ++Ed++l+++vk G g+W++Iar+++ gR +kqc++rw++ gw1.4.828.1 2 KGNWLADEDDRLKQLVKTEGEGQWSAIARHFP-GRIGKQCRERWHNQ 47 79******************************.************96 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 54 | 96 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT eE+ +l++a+++ G++ W+ Ia+ + gRt++ +k++w+ gw1.4.828.1 54 REAWTDEEETILIEAHRRVGNK-WADIAKVIT-GRTENAVKNHWN 96 789*******************.********9.***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.2E-14 | 1 | 50 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 28.132 | 1 | 52 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.3E-16 | 2 | 48 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.14E-28 | 2 | 95 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 3 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.39E-11 | 4 | 46 | No hit | No description |
SMART | SM00717 | 1.2E-14 | 53 | 101 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.611 | 53 | 102 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.5E-15 | 54 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.76E-9 | 56 | 99 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 56 | 101 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
VKGNWLADED DRLKQLVKTE GEGQWSAIAR HFPGRIGKQC RERWHNQLRP DIKREAWTDE 60 EETILIEAHR RVGNKWADIA KVITGRTENA VKNHWNATLR RR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-42 | 1 | 102 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-43 | 1 | 102 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-43 | 1 | 102 | 3 | 104 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005649650.1 | 1e-68 | Homeodomain-like protein, partial | ||||
Swissprot | Q9FY60 | 3e-42 | MYB64_ARATH; Transcription factor MYB64 | ||||
TrEMBL | I0Z387 | 3e-67 | I0Z387_COCSC; Homeodomain-like protein (Fragment) | ||||
STRING | XP_005649650.1 | 4e-68 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 1e-44 | myb domain protein 64 |
Link Out ? help Back to Top | |
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Entrez Gene | 17043109 |
Publications ? help Back to Top | |||
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