PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.18.294.1 | ||||||||
Common Name | COCSUDRAFT_9740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | CPP | ||||||||
Protein Properties | Length: 90aa MW: 9974.41 Da PI: 8.1094 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 21 | 6.6e-07 | 1 | 24 | 17 | 41 |
TCR 17 YCeCfaagkkCseeCkCedCkNkee 41 YCeCfa+g++C+ C+C +C+N++e gw1.18.294.1 1 YCECFASGRYCDG-CNCVNCCNNKE 24 *************.********987 PP | |||||||
2 | TCR | 33.5 | 8.3e-11 | 69 | 90 | 1 | 22 |
TCR 1 kekkgCnCkkskClkkYCeCfa 22 +++kgCnCkks ClkkYCeCf+ gw1.18.294.1 69 RHNKGCNCKKSGCLKKYCECFQ 90 589******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 0.11 | 1 | 25 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 24.783 | 1 | 90 | IPR005172 | CRC domain |
SMART | SM01114 | 0.047 | 69 | 90 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.6E-7 | 72 | 90 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
YCECFASGRY CDGCNCVNCC NNKESEQVRQ AAVEAILERN PNAFRPKIQV LEPFCTTGTH 60 VAIQGAAARH NKGCNCKKSG CLKKYCECFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-15 | 1 | 90 | 25 | 104 | Protein lin-54 homolog |
5fd3_B | 4e-15 | 1 | 90 | 25 | 104 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00269 | DAP | Transfer from AT2G20110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005644154.1 | 5e-60 | hypothetical protein COCSUDRAFT_9740, partial | ||||
Swissprot | Q9SL70 | 2e-32 | TCX6_ARATH; Protein tesmin/TSO1-like CXC 6 | ||||
TrEMBL | I0YMJ1 | 1e-58 | I0YMJ1_COCSC; Uncharacterized protein (Fragment) | ||||
STRING | XP_005644154.1 | 2e-59 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP323 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 1e-26 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17037582 |
Publications ? help Back to Top | |||
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