PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.1.725.1
Common NameCOCSUDRAFT_8449
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family WRKY
Protein Properties Length: 171aa    MW: 19107.2 Da    PI: 10.4012
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.1.725.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.4e-27259259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                 dDgy+WrKYG K+vkgs++prsYY+C++++C+vkk ver+ e+++v +   +g Hnh 
  gw1.1.725.1  2 DDGYHWRKYGEKQVKGSPYPRSYYKCSQQNCQVKKIVERNPENGEVSKSASKGVHNHA 59
                 8********************************************************7 PP
2WRKY99.91.5e-31111169159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDgy+WrKYGqK vkg+++prsYY+Ct agC+v+k+v rsa++  v+++ Yeg+Hnh+
  gw1.1.725.1 111 MDDGYRWRKYGQKIVKGNPHPRSYYKCTVAGCTVRKHVGRSATEAGVLVTSYEGQHNHP 169
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007746.0E-26160IPR003657WRKY domain
PROSITE profilePS5081125.281161IPR003657WRKY domain
SuperFamilySSF1182908.37E-23261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-23261IPR003657WRKY domain
PfamPF031065.4E-21258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-3297171IPR003657WRKY domain
SuperFamilySSF1182902.48E-27105171IPR003657WRKY domain
PROSITE profilePS5081132.627106171IPR003657WRKY domain
SMARTSM007743.5E-34111170IPR003657WRKY domain
PfamPF031063.2E-25112169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
NDDGYHWRKY GEKQVKGSPY PRSYYKCSQQ NCQVKKIVER NPENGEVSKS ASKGVHNHAK  60
PGGSQGVGTS GRGGRFQGRG RAAQTSSLMR VQVQRSDNKH VVESRTDQDS MDDGYRWRKY  120
GQKIVKGNPH PRSYYKCTVA GCTVRKHVGR SATEAGVLVT SYEGQHNHPQ P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-292171878Probable WRKY transcription factor 4
2lex_A1e-292171878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651953.11e-124WRKY-domain-containing protein, partial
SwissprotQ93WU72e-50WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLI0Z9U01e-122I0Z9U0_COCSC; WRKY-domain-containing protein (Fragment)
STRINGXP_005651953.11e-123(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.21e-50WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]