PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | fgenesh1_pm.4_#_96 | ||||||||
Common Name | COCSUDRAFT_35694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 116aa MW: 13301.9 Da PI: 10.5729 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.2e-17 | 23 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +WT+eEde+l+++v +G+ W+ I+r + gRt+ qc rw+ +l fgenesh1_pm.4_#_96 23 REKWTEEEDERLLELVGVHGNA-WAEISRQLE-GRTDQQCMGRWRRHL 68 789*******************.*********.************986 PP | |||||||
2 | Myb_DNA-binding | 39.1 | 1.7e-12 | 74 | 115 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W + Ed l+ +++++G++ W++Ia+ + gRt+ qc+ rw fgenesh1_pm.4_#_96 74 RVSWAAPEDAALASLHARHGSH-WSAIAKSID-GRTAQQCRARW 115 6789999***************.*********.**********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-10 | 1 | 28 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.706 | 1 | 17 | IPR017930 | Myb domain |
PROSITE profile | PS51294 | 28.254 | 18 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.83E-26 | 20 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-16 | 22 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 2.9E-17 | 26 | 82 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 29 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.45E-4 | 41 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-16 | 71 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.786 | 73 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-4 | 73 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.89E-7 | 76 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 116 aa Download sequence Send to blast |
MGSRTGQQCA QRWRHKVNPN IKREKWTEEE DERLLELVGV HGNAWAEISR QLEGRTDQQC 60 MGRWRRHLDP GIKRVSWAAP EDAALASLHA RHGSHWSAIA KSIDGRTAQQ CRARW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-26 | 1 | 115 | 5 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_005649766.1 | 5e-79 | hypothetical protein COCSUDRAFT_35694 | ||||
TrEMBL | I0Z3K3 | 1e-77 | I0Z3K3_COCSC; Uncharacterized protein | ||||
STRING | XP_005649766.1 | 2e-78 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-27 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 17043224 |
Publications ? help Back to Top | |||
---|---|---|---|
|