PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.7_#_208

Common Name

COCSUDRAFT_41804

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 393aa MW: 43433.6 Da PI: 5.6254

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.7_#_208	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.1	3.4e-07	10	58	13	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 NR A++++R++K e+++++ +keL a+++++++e lk ++l++ fgenesh1_pg.7_#_208 10 NRRAQKKYREKKMNEMDHYKVQIKELNAKMRQMAEEKRALKADRDRLEQ 58 *****************************************99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14686	1.83E-5	10	61	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MSTRLGLLYN RRAQKKYREK KMNEMDHYKV QIKELNAKMR QMAEEKRALK ADRDRLEQIM 60 QSGGAQVSSI PIQPSPAQQF VETLKCLFAN GAEDVSSPAH NEALALMSKS REVQQILVLM 120 FPFKAARLKA DIQQQACREA GPHSPALWRS TVAAANFTPL QRQRLIALRA KFLKDIDDVV 180 TERRILTQGI KAMLPHPGNA SAFANTLFKA QLSTSQLRAN LEREYQLVTH FICKAVHETI 240 TPIQHARCIV AAAPHLPDIL YICSQLYIEE ADLAADIDAL PDMNTIFSDM SSYWWVTGQE 300 QEEMDGSLWP AVYQGLDVYH EPSGPLSAPP AASLLGFTSF SQGADDVAAG AAEDELPTDA 360 IAALLAADSL PLPDELDPCH TVEPAAALRW ES*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MSTRLGLLYN RRAQKKYREK KMNEMDHYKV QIKELNAKMR QMAEEKRALK ADRDRLEQIM  60
QSGGAQVSSI PIQPSPAQQF VETLKCLFAN GAEDVSSPAH NEALALMSKS REVQQILVLM  120
FPFKAARLKA DIQQQACREA GPHSPALWRS TVAAANFTPL QRQRLIALRA KFLKDIDDVV  180
TERRILTQGI KAMLPHPGNA SAFANTLFKA QLSTSQLRAN LEREYQLVTH FICKAVHETI  240
TPIQHARCIV AAAPHLPDIL YICSQLYIEE ADLAADIDAL PDMNTIFSDM SSYWWVTGQE  300
QEEMDGSLWP AVYQGLDVYH EPSGPLSAPP AASLLGFTSF SQGADDVAAG AAEDELPTDA  360
IAALLAADSL PLPDELDPCH TVEPAAALRW ES*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005648162.1	0.0	hypothetical protein COCSUDRAFT_41804
TrEMBL	I0YYZ9	0.0	I0YYZ9_COCSC; Uncharacterized protein
STRING	XP_005648162.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17041610

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]