PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.6_#_391

Common Name

COCSUDRAFT_41588

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 332aa MW: 35329.2 Da PI: 9.5177

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.6_#_391	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.4e-11	108	167	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e k+e+r+ NReAArr R+R+ ++ ee+v+ L++ N++L ++++l +++++e fgenesh1_pg.6_#_391 108 EEKKEKRRLANREAARRMRRRRATHMAAVEEEVERLSQDNSMLLHRMSQLVASHQAVDAE 167 779*****************************************9999987766666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.4E-9	104	157	No hit	No description
SMART	SM00338	2.7E-11	106	170	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-8	107	158	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.001	108	171	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.38E-8	110	161	No hit	No description
PROSITE pattern	PS00036	0	113	128	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MMQAIQGRRG KVSRGGSPVD AAGVKKRTMA QVNGLRHDAH ALMALAAATQ RAAVQDAPQR 60 PPLAPEEFHE PARQESVSSD NDYSEEQYQL EKQRAAPRGS GAAAESEEEK KEKRRLANRE 120 AARRMRRRRA THMAAVEEEV ERLSQDNSML LHRMSQLVAS HQAVDAENAQ LRADLMNLRA 180 SVGACLHAGQ LDRAAPGLAA AVANGTISPS LVVPTPRPAA GPTSTDDHDE RSAPVAPAAR 240 RLVVEQQARA GRQAEGLPSG QASGVPSSSG GQSTENEMTV TEEERAKYSN STVARPDASF 300 ATSGEALPSA SRTQRKKGTA WKAAGSWLAE D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	128	KRRLANREAARRMRRRR
2	122	127	RRMRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005648901.1	0.0	hypothetical protein COCSUDRAFT_41588
TrEMBL	I0Z138	0.0	I0Z138_COCSC; Uncharacterized protein
STRING	XP_005648901.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17042355

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]