PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.6_#_173 | ||||||||
Common Name | COCSUDRAFT_41370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | bZIP | ||||||||
Protein Properties | Length: 400aa MW: 42666.9 Da PI: 7.8776 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46 | 1.2e-14 | 51 | 107 | 6 | 62 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ rk+kNReAAr+sR+RK ++++L++ v eL++eN+ L k ++el+++ a++++e fgenesh1_pg.6_#_173 51 ATLRKAKNREAARKSRERKMRRVDNLTTSVNELTKENDLLSKCIQELSEQRASVEAE 107 689*************************************************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-10 | 44 | 110 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-10 | 53 | 105 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.8E-11 | 53 | 104 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-9 | 53 | 102 | No hit | No description |
CDD | cd14686 | 2.59E-12 | 54 | 102 | No hit | No description |
PROSITE profile | PS50217 | 10.438 | 54 | 111 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 54 | 68 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MPAIPIMQNM GHTSSQASQE SSGRRKRKAP SRSGELCGDD LSVLDVDCRE ATLRKAKNRE 60 AARKSRERKM RRVDNLTTSV NELTKENDLL SKCIQELSEQ RASVEAETRL TKEQIQAIRA 120 KAASQEDRQV IDRLLDNAVT MAHAQLPSQP QSQYPQLPLQ VPMQSHLAGA FCGSGSKDNV 180 EAAHWQGIPS TVQSSLIHPY AQRFMTPEEI VRGDRPSSAS DTLQPSAMYD GRLGPVPQQG 240 AEAGCMSGYA VNESGVTARG GSPASARAQP DVDTTPGAFP PHPKRSRSVR GGKAKRVSPP 300 SAESFGGPLM LPLSELRYQQ ELACHVEGPQ GLRREGSLDL LEAAGGIPSP ESLLAGSLSS 360 QGASFASGSS LSMGSMHDFF LDGASLLPPG VYAHSSSML* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005648599.1 | 0.0 | hypothetical protein COCSUDRAFT_41370 | ||||
TrEMBL | I0Z086 | 0.0 | I0Z086_COCSC; Uncharacterized protein | ||||
STRING | XP_005648599.1 | 0.0 | (Coccomyxa subellipsoidea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 1e-07 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Entrez Gene | 17042053 |
Publications ? help Back to Top | |||
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