PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.6_#_173
Common NameCOCSUDRAFT_41370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 400aa    MW: 42666.9 Da    PI: 7.8776
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.6_#_173genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1461.2e-1451107662
                          HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          ++ rk+kNReAAr+sR+RK  ++++L++ v eL++eN+ L k ++el+++ a++++e
  fgenesh1_pg.6_#_173  51 ATLRKAKNREAARKSRERKMRRVDNLTTSVNELTKENDLLSKCIQELSEQRASVEAE 107
                          689*************************************************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-1044110IPR004827Basic-leucine zipper domain
PfamPF001701.4E-1053105IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-1153104No hitNo description
SuperFamilySSF579597.5E-953102No hitNo description
CDDcd146862.59E-1254102No hitNo description
PROSITE profilePS5021710.43854111IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605468IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MPAIPIMQNM GHTSSQASQE SSGRRKRKAP SRSGELCGDD LSVLDVDCRE ATLRKAKNRE  60
AARKSRERKM RRVDNLTTSV NELTKENDLL SKCIQELSEQ RASVEAETRL TKEQIQAIRA  120
KAASQEDRQV IDRLLDNAVT MAHAQLPSQP QSQYPQLPLQ VPMQSHLAGA FCGSGSKDNV  180
EAAHWQGIPS TVQSSLIHPY AQRFMTPEEI VRGDRPSSAS DTLQPSAMYD GRLGPVPQQG  240
AEAGCMSGYA VNESGVTARG GSPASARAQP DVDTTPGAFP PHPKRSRSVR GGKAKRVSPP  300
SAESFGGPLM LPLSELRYQQ ELACHVEGPQ GLRREGSLDL LEAAGGIPSP ESLLAGSLSS  360
QGASFASGSS LSMGSMHDFF LDGASLLPPG VYAHSSSML*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005648599.10.0hypothetical protein COCSUDRAFT_41370
TrEMBLI0Z0860.0I0Z086_COCSC; Uncharacterized protein
STRINGXP_005648599.10.0(Coccomyxa subellipsoidea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-07basic leucine-zipper 44
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]