PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.4_#_416
Common NameCOCSUDRAFT_40767
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB
Protein Properties Length: 652aa    MW: 70713.8 Da    PI: 6.2985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.4_#_416genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-13282325346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +W+++Ed +lv++ +++G+++W+ +a+++g+gRt+  c sr+q 
  fgenesh1_pg.4_#_416 282 PWSQQEDAKLVKLQARHGMHRWEVVAQKLGTGRTAAACLSRFQR 325
                          8*****************************************95 PP
2Myb_DNA-binding43.76.5e-14334377246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +WT+e+  +l+ +v++lG+ +W ++a++mg +Rt+ q+++++++
  fgenesh1_pg.4_#_416 334 SKWTPEDAARLAALVARLGTANWVAVAAEMG-NRTPQQVQHYYRD 377
                          58*****************************.***********96 PP
3Myb_DNA-binding42.81.2e-13384429148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W ++Ed  l++av+  G + W+ +++ ++ +R++kqc++r+ ++l
  fgenesh1_pg.4_#_416 384 KGPWAADEDAALLKAVETCGRR-WREVSKLVP-RRSDKQCRERFCNVL 429
                          79******************99.*********.***********9975 PP
4Myb_DNA-binding30.21e-09438478340
                          SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqc 40 
                           W +eEd  l  a++q+  +    +W+++ + ++ gRt+++c
  fgenesh1_pg.4_#_416 438 EWAPEEDAALRAAIAQHTQPdgkvRWAKVGAQLP-GRTDNSC 478
                          7*********************************.******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.552182274IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-6182196IPR009057Homeodomain-like
SMARTSM007172.6182276IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-6241275IPR009057Homeodomain-like
PROSITE profilePS5129417.112275331IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-13276328IPR009057Homeodomain-like
SuperFamilySSF466893.48E-18278375IPR009057Homeodomain-like
SMARTSM007178.0E-11279329IPR001005SANT/Myb domain
PfamPF002492.5E-11282325IPR001005SANT/Myb domain
CDDcd001671.01E-8282325No hitNo description
PROSITE profilePS500907.735328376IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.3E-11329378IPR009057Homeodomain-like
SMARTSM007178.6E-9332381IPR001005SANT/Myb domain
PfamPF002491.1E-12334377IPR001005SANT/Myb domain
CDDcd001672.72E-4335376No hitNo description
PROSITE profilePS5129423.385379433IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-17381429IPR009057Homeodomain-like
SuperFamilySSF466899.18E-19382481IPR009057Homeodomain-like
SMARTSM007171.8E-15383431IPR001005SANT/Myb domain
PfamPF002492.2E-13384429IPR001005SANT/Myb domain
CDDcd001672.52E-10386429No hitNo description
Gene3DG3DSA:1.10.10.601.1E-11430481IPR009057Homeodomain-like
PROSITE profilePS5129411.916434490IPR017930Myb domain
SMARTSM007173.7E-4435488IPR001005SANT/Myb domain
CDDcd001673.51E-7438483No hitNo description
PfamPF002491.7E-7438479IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVSLADFEED EQTDDDHQSG DDEDVDWEDA EGLPYATLQA EIAGIGATLQ ENEDQADGHE  60
DTAEAEHAAG LQEQHGPKAV IAKALAANRR LQSRLTNILA AVDRTIWRNA ETQAKLMHNA  120
EAWPRAGRYR GMRETSNTVW GNAETRVIGP SRFWVADRKV PEPNADAMRT APAFEYLPHT  180
FRDASWTPDE HERLQRAILQ AVNRARSARE LADAGLHGHS EGDRGPEEQL LKLDSPGVDA  240
EVDAFGPEQW EEVARLGSSG RSGHECATQW GHRLRPSLNL SPWSQQEDAK LVKLQARHGM  300
HRWEVVAQKL GTGRTAAACL SRFQRCHNPV LLESKWTPED AARLAALVAR LGTANWVAVA  360
AEMGNRTPQQ VQHYYRDNVQ ALKKGPWAAD EDAALLKAVE TCGRRWREVS KLVPRRSDKQ  420
CRERFCNVLD PGLKREDEWA PEEDAALRAA IAQHTQPDGK VRWAKVGAQL PGRTDNSCWR  480
RSKTLAAKER GTHKQPTAPR GSGGRFLRPA APADGAAPAG HTPRETGSGA DASEAAHVAA  540
GETAAEPGSG NGERSGGQCE RNEEEEEHAG GAVDRGAAAE LAGGVEGRGK GRSGGGGKKG  600
ARDTTKNAKG KVALGLGESA IAQQDDDGEG TGFADPEDHP LRKKHRAQAR R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-212144781155MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-212144781155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650103.10.0hypothetical protein COCSUDRAFT_40767
TrEMBLI0Z4J00.0I0Z4J0_COCSC; Uncharacterized protein
STRINGXP_005650103.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP42351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.16e-42myb domain protein 4r1
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]