PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.2_#_40

Common Name

COCSUDRAFT_39428

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 298aa MW: 32176.1 Da PI: 6.673

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.2_#_40	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.1	3.3e-07	123	178	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 e k err++ NR AA+r RqR+ + + +L++++ Le+e+ + + + +l + + fgenesh1_pg.2_#_40 123 EEKLERRREGNRRAAQRLRQRRMETVSRLQTEISRLEQERLVYLNHIYQLAASARS 178 5699************************************8888888888766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-4	121	185	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.565	123	186	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-7	124	172	No hit	No description
SuperFamily	SSF57959	2.11E-6	125	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MAAVEAESVF LTQGDMSKYN YAQVARQFQN AIADIAQTLP QMCTTLPKQS KGQCSSDASI 60 GVGYSHSASA RHASDDAEEL NEETSRGSKR SADVLEGLLG EERGTSDDAK RPKCPDARML 120 SHEEKLERRR EGNRRAAQRL RQRRMETVSR LQTEISRLEQ ERLVYLNHIY QLAASARSVV 180 AENKDLRGRL KALQTGTSAL VAEAALPRAT GKAAASAAAE ALLGRGGGGN AKAGGSSSAA 240 TSRMDFDAVR RELFVPADSP VWPFPCDLVD EYVEACPVPV LEFLPVIGDI RVSHVEC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005650841.1	0.0	hypothetical protein COCSUDRAFT_39428
TrEMBL	I0Z6M8	0.0	I0Z6M8_COCSC; Uncharacterized protein
STRING	XP_005650841.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17044307

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]