PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.23_#_7
Common NameCOCSUDRAFT_45253
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family AP2
Protein Properties Length: 789aa    MW: 84300 Da    PI: 6.5623
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.23_#_7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.4e-11305354155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GV+w  ++g W+A+ +d      +k   +g f+ +eeAa+a+++a+++++g
  fgenesh1_pg.23_#_7 305 PVFRGVTWAASNGCWRAQAWDG-----NKVQCVGFFDDPEEAARAYDQAALQFRG 354
                         579***************9994.....588889999***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577562.62E-5247283IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.894266280IPR001878Zinc finger, CCHC-type
PfamPF008479.1E-7305354IPR001471AP2/ERF domain
SMARTSM003805.2E-11306368IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-13306363IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-11306363IPR001471AP2/ERF domain
PROSITE profilePS5103213.788306362IPR001471AP2/ERF domain
CDDcd000185.43E-12307362No hitNo description
PfamPF093537.8E-19437595IPR018962Domain of unknown function DUF1995
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MGRSSAQQPG PNGSSKVPLE SGESDAGSAE AAAAERRRSK AEAGSSQAQS SQPGSSQAQS  60
SQPGSSQLGS SQPAGPGRTV RLIKGPGGRL IRAPVAAGSD DEDGDPLPTS RAARTENPEE  120
EGTRRTVRLV RGPKGEMMDA RKVAGWVTLP DGQRTVCPRC EGQAFIRAKG VAGGVLTWLF  180
MTGEAEIDGM DPRGGARPRR TGGVGRRGPL SDEHKEKIRA SMAGRKRQPL REEHKQRISA  240
SMRAVHSEGG TRQHISASAR GKAKTCALCG EAGHNKRTCP LNPSAEAPAA KRPKATMYPR  300
PEGGPVFRGV TWAASNGCWR AQAWDGNKVQ CVGFFDDPEE AARAYDQAAL QFRGDKAVTN  360
FPRDDYEETS SEQPAAPDDE AEEVPDLVEI GAESASSQPV AAQPLPAAVE ERRADLQQEK  420
ELENVAAKAP PVVFPLPMTR EEAVQGAVEG ILRAWAAGKR RQRVELLLPE DGASPFDGGG  480
WPGGVKQQFA AVRSMVEATL MQLKQRPEFR GRLEARWLDE SDCVGAWQSD SLAAVVLPTA  540
DSLDALREID ADRGGRRLIL VFNPQWQTDG QIVSDFGFGR SKQEAEDFVG SFEDAAVTKR  600
LRIMGDDVHF IWANGQGALL AGVERVRPGY ERLLQLLRSV PGSKASRSWV DRVNPFTRLG  660
MGNGASVEEL LAARDAAERR MRAAQNGVRS PIPAADPLMP PLGSGLGEDA RSGAVAPEQA  720
ALTKAANNES SSDSARLERA GAADRFGGVD IITGRPVRDL KLDPVLQLAR WQRSIFGSKD  780
DSVDEEGE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005642989.10.0hypothetical protein COCSUDRAFT_45253
TrEMBLI0YJ760.0I0YJ76_COCSC; Uncharacterized protein
STRINGXP_005642989.10.0(Coccomyxa subellipsoidea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.12e-11AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]